Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF996 and GFF997 are separated by 130 nucleotides GFF997 and GFF998 are separated by 122 nucleotides GFF998 and GFF999 are separated by 5 nucleotides GFF999 and GFF1000 are separated by 16 nucleotides
GFF996 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 735,246 to 736,055
GFF996
GFF997 - MaoC-related acyl dehydratase, at 736,186 to 736,668
GFF997
GFF998 - putative thiolase, at 736,791 to 737,960
GFF998
GFF999 - hypothetical protein, at 737,966 to 738,367
GFF999
GFF1000 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 738,384 to 739,616
GFF1000
Position (kb) 736
737
738 Strain fitness (log2 ratio) -1
0
1 at 735.872 kb on - strand, within GFF996 at 736.078 kb on - strand at 736.316 kb on - strand, within GFF997 at 736.316 kb on - strand, within GFF997 at 736.406 kb on - strand, within GFF997 at 736.406 kb on - strand, within GFF997 at 736.475 kb on + strand, within GFF997 at 736.476 kb on - strand, within GFF997 at 736.564 kb on + strand, within GFF997 at 736.744 kb on + strand at 736.744 kb on + strand at 736.744 kb on + strand at 736.745 kb on - strand at 736.791 kb on - strand at 737.021 kb on + strand, within GFF998 at 737.021 kb on + strand, within GFF998 at 737.133 kb on + strand, within GFF998 at 737.274 kb on + strand, within GFF998 at 737.423 kb on + strand, within GFF998 at 737.652 kb on + strand, within GFF998 at 737.761 kb on + strand, within GFF998 at 737.762 kb on - strand, within GFF998 at 737.815 kb on - strand, within GFF998 at 737.815 kb on - strand, within GFF998 at 737.964 kb on - strand at 737.969 kb on + strand at 737.969 kb on + strand at 737.969 kb on + strand at 737.970 kb on - strand at 737.970 kb on - strand at 738.156 kb on - strand, within GFF999 at 738.156 kb on - strand, within GFF999 at 738.156 kb on - strand, within GFF999 at 738.161 kb on + strand, within GFF999 at 738.162 kb on - strand, within GFF999 at 738.212 kb on + strand, within GFF999 at 738.366 kb on - strand at 738.525 kb on + strand, within GFF1000 at 738.588 kb on + strand, within GFF1000 at 738.588 kb on + strand, within GFF1000 at 738.589 kb on - strand, within GFF1000 at 738.937 kb on - strand, within GFF1000
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 735,872 - GFF996 0.77 +1.3 736,078 - +0.1 736,316 - GFF997 0.27 +0.4 736,316 - GFF997 0.27 -0.2 736,406 - GFF997 0.46 -1.2 736,406 - GFF997 0.46 +0.4 736,475 + GFF997 0.60 +0.5 736,476 - GFF997 0.60 -0.2 736,564 + GFF997 0.78 -0.3 736,744 + -0.1 736,744 + +0.4 736,744 + -0.6 736,745 - -0.1 736,791 - +0.1 737,021 + GFF998 0.20 -0.1 737,021 + GFF998 0.20 -0.0 737,133 + GFF998 0.29 +0.3 737,274 + GFF998 0.41 -0.0 737,423 + GFF998 0.54 -0.5 737,652 + GFF998 0.74 +0.2 737,761 + GFF998 0.83 +0.7 737,762 - GFF998 0.83 +0.1 737,815 - GFF998 0.88 -0.4 737,815 - GFF998 0.88 -0.2 737,964 - -0.5 737,969 + +0.1 737,969 + +0.2 737,969 + -0.1 737,970 - -0.4 737,970 - -0.1 738,156 - GFF999 0.47 -0.6 738,156 - GFF999 0.47 -0.2 738,156 - GFF999 0.47 +0.1 738,161 + GFF999 0.49 -0.5 738,162 - GFF999 0.49 +0.3 738,212 + GFF999 0.61 +0.1 738,366 - +0.2 738,525 + GFF1000 0.11 -0.5 738,588 + GFF1000 0.17 +0.6 738,588 + GFF1000 0.17 +0.5 738,589 - GFF1000 0.17 -0.1 738,937 - GFF1000 0.45 +0.0
Or see this region's nucleotide sequence