Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF954 and GFF955 are separated by 103 nucleotides GFF955 and GFF956 are separated by 114 nucleotides GFF956 and GFF957 are separated by 62 nucleotides
GFF954 - Mobile element protein, at 689,715 to 689,921
GFF954
GFF955 - Mobile element protein, at 690,025 to 690,189
GFF955
GFF956 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 690,304 to 691,989
GFF956
GFF957 - MaoC-like dehydratase, at 692,052 to 692,561
GFF957
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 689.414 kb on - strand at 689.539 kb on + strand at 689.539 kb on + strand at 689.539 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.619 kb on - strand at 689.619 kb on - strand at 689.619 kb on - strand at 689.620 kb on - strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.713 kb on - strand at 689.713 kb on - strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.965 kb on + strand at 689.965 kb on + strand at 689.966 kb on - strand at 689.966 kb on - strand at 689.966 kb on - strand at 689.966 kb on - strand at 690.028 kb on + strand at 690.028 kb on + strand at 690.028 kb on + strand at 690.028 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.037 kb on + strand at 690.066 kb on + strand, within GFF955 at 690.067 kb on - strand, within GFF955 at 690.127 kb on + strand, within GFF955 at 690.127 kb on + strand, within GFF955 at 690.127 kb on + strand, within GFF955 at 690.128 kb on - strand, within GFF955 at 690.128 kb on - strand, within GFF955 at 690.187 kb on + strand at 690.188 kb on - strand at 690.235 kb on + strand at 690.236 kb on - strand at 690.236 kb on - strand at 690.274 kb on + strand at 690.275 kb on - strand at 690.275 kb on - strand at 690.285 kb on - strand at 690.306 kb on - strand at 690.317 kb on + strand at 690.317 kb on + strand at 690.318 kb on - strand at 690.477 kb on - strand, within GFF956 at 690.477 kb on - strand, within GFF956 at 690.497 kb on + strand, within GFF956 at 690.498 kb on - strand, within GFF956 at 690.498 kb on - strand, within GFF956 at 690.974 kb on + strand, within GFF956 at 691.160 kb on + strand, within GFF956 at 691.160 kb on + strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.229 kb on + strand, within GFF956 at 691.229 kb on + strand, within GFF956 at 691.229 kb on + strand, within GFF956 at 691.230 kb on - strand, within GFF956 at 691.230 kb on - strand, within GFF956 at 691.230 kb on - strand, within GFF956 at 691.264 kb on + strand, within GFF956 at 691.265 kb on - strand, within GFF956 at 691.265 kb on - strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.365 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.495 kb on - strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.762 kb on + strand, within GFF956 at 691.762 kb on + strand, within GFF956 at 691.762 kb on + strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.766 kb on + strand, within GFF956 at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 692.110 kb on + strand, within GFF957 at 692.110 kb on + strand, within GFF957 at 692.110 kb on + strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.159 kb on + strand, within GFF957 at 692.159 kb on + strand, within GFF957 at 692.160 kb on - strand, within GFF957 at 692.160 kb on - strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.242 kb on + strand, within GFF957 at 692.243 kb on - strand, within GFF957 at 692.243 kb on - strand, within GFF957 at 692.404 kb on + strand, within GFF957 at 692.404 kb on + strand, within GFF957 at 692.404 kb on + strand, within GFF957 at 692.405 kb on - strand, within GFF957 at 692.405 kb on - strand, within GFF957 at 692.500 kb on + strand, within GFF957 at 692.500 kb on + strand, within GFF957 at 692.501 kb on - strand, within GFF957 at 692.501 kb on - strand, within GFF957 at 692.527 kb on + strand at 692.527 kb on + strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.529 kb on + strand at 692.635 kb on + strand at 692.635 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.652 kb on - strand at 692.707 kb on + strand at 692.707 kb on + strand at 692.708 kb on - strand at 692.752 kb on - strand at 692.794 kb on + strand at 692.794 kb on + strand at 692.795 kb on - strand at 692.908 kb on + strand at 692.909 kb on - strand at 692.971 kb on + strand at 692.971 kb on + strand at 692.971 kb on + strand at 692.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 689,414 - -0.0 689,539 + -1.5 689,539 + +1.0 689,539 + -0.3 689,582 + -0.2 689,582 + -0.2 689,582 + +0.1 689,582 + -0.2 689,583 - +0.4 689,583 - +0.1 689,583 - -0.1 689,583 - -0.2 689,618 + +0.3 689,618 + +0.2 689,618 + +0.5 689,618 + -0.1 689,618 + -0.5 689,618 + -0.2 689,618 + +0.1 689,619 - -0.2 689,619 - -1.8 689,619 - +0.1 689,620 - -0.0 689,621 + +0.1 689,621 + -0.2 689,621 + -0.2 689,621 + -0.1 689,622 - -0.1 689,622 - -1.9 689,622 - -0.4 689,622 - -0.1 689,622 - +0.2 689,622 - -0.1 689,712 + -0.2 689,712 + -1.0 689,712 + -0.3 689,712 + +0.8 689,712 + -0.1 689,712 + +0.5 689,713 - +1.1 689,713 - -0.8 689,946 + +0.1 689,946 + -0.0 689,946 + -0.2 689,946 + +0.1 689,946 + -0.1 689,947 - +0.1 689,947 - +0.2 689,947 - -0.4 689,947 - -0.5 689,947 - +0.0 689,947 - +0.5 689,965 + +0.2 689,965 + -0.9 689,966 - -0.2 689,966 - +1.2 689,966 - -0.5 689,966 - -0.3 690,028 + +1.0 690,028 + -0.5 690,028 + +0.3 690,028 - +0.1 690,029 - -0.0 690,029 - -0.4 690,029 - -0.1 690,029 - -0.0 690,029 - +0.3 690,029 - +0.8 690,037 + +0.1 690,066 + GFF955 0.25 +0.4 690,067 - GFF955 0.25 -0.2 690,127 + GFF955 0.62 -0.0 690,127 + GFF955 0.62 -0.2 690,127 + GFF955 0.62 +0.2 690,128 - GFF955 0.62 +0.0 690,128 - GFF955 0.62 -1.0 690,187 + -1.5 690,188 - +0.1 690,235 + +0.1 690,236 - +0.5 690,236 - +0.4 690,274 + -1.3 690,275 - -0.1 690,275 - -0.2 690,285 - -0.8 690,306 - +0.4 690,317 + +0.0 690,317 + -0.5 690,318 - +0.4 690,477 - GFF956 0.10 -0.1 690,477 - GFF956 0.10 -0.2 690,497 + GFF956 0.11 +0.6 690,498 - GFF956 0.12 -1.1 690,498 - GFF956 0.12 -0.1 690,974 + GFF956 0.40 +0.2 691,160 + GFF956 0.51 +1.1 691,160 + GFF956 0.51 +0.0 691,161 - GFF956 0.51 +0.3 691,161 - GFF956 0.51 +0.6 691,161 - GFF956 0.51 -0.1 691,161 - GFF956 0.51 +0.1 691,161 - GFF956 0.51 -0.7 691,229 + GFF956 0.55 +0.4 691,229 + GFF956 0.55 +0.5 691,229 + GFF956 0.55 -0.2 691,230 - GFF956 0.55 -0.2 691,230 - GFF956 0.55 +0.3 691,230 - GFF956 0.55 -1.6 691,264 + GFF956 0.57 -0.3 691,265 - GFF956 0.57 -0.3 691,265 - GFF956 0.57 +0.1 691,361 + GFF956 0.63 -0.2 691,361 + GFF956 0.63 +0.4 691,361 + GFF956 0.63 +0.2 691,361 + GFF956 0.63 +0.4 691,361 + GFF956 0.63 -0.6 691,361 + GFF956 0.63 +0.5 691,361 + GFF956 0.63 -0.2 691,362 - GFF956 0.63 +0.9 691,362 - GFF956 0.63 +0.0 691,362 - GFF956 0.63 -0.1 691,362 - GFF956 0.63 +0.5 691,362 - GFF956 0.63 -0.2 691,362 - GFF956 0.63 +0.5 691,365 + GFF956 0.63 -0.1 691,418 + GFF956 0.66 +0.2 691,418 + GFF956 0.66 +1.4 691,418 + GFF956 0.66 -0.1 691,418 + GFF956 0.66 +0.9 691,418 + GFF956 0.66 -0.8 691,419 - GFF956 0.66 -0.1 691,419 - GFF956 0.66 -1.8 691,419 - GFF956 0.66 +0.2 691,419 - GFF956 0.66 +0.1 691,419 - GFF956 0.66 -0.2 691,419 - GFF956 0.66 +0.4 691,495 - GFF956 0.71 -0.1 691,498 + GFF956 0.71 +0.5 691,498 + GFF956 0.71 +1.5 691,498 + GFF956 0.71 +0.8 691,498 + GFF956 0.71 -0.2 691,499 - GFF956 0.71 +0.4 691,499 - GFF956 0.71 +0.2 691,499 - GFF956 0.71 +0.6 691,499 - GFF956 0.71 +0.8 691,625 + GFF956 0.78 +0.3 691,625 + GFF956 0.78 -1.5 691,625 + GFF956 0.78 -2.1 691,625 + GFF956 0.78 +0.9 691,625 + GFF956 0.78 -0.7 691,625 + GFF956 0.78 +0.3 691,625 + GFF956 0.78 -0.2 691,626 - GFF956 0.78 +0.5 691,626 - GFF956 0.78 -0.5 691,626 - GFF956 0.78 -0.3 691,626 - GFF956 0.78 -0.2 691,626 - GFF956 0.78 -0.2 691,626 - GFF956 0.78 -0.3 691,626 - GFF956 0.78 +0.1 691,626 - GFF956 0.78 +0.3 691,626 - GFF956 0.78 +0.8 691,626 - GFF956 0.78 -0.4 691,626 - GFF956 0.78 +0.0 691,762 + GFF956 0.86 -0.1 691,762 + GFF956 0.86 -0.5 691,762 + GFF956 0.86 +1.1 691,763 - GFF956 0.87 +0.0 691,763 - GFF956 0.87 +0.2 691,763 - GFF956 0.87 -0.6 691,763 - GFF956 0.87 +0.6 691,763 - GFF956 0.87 +0.1 691,763 - GFF956 0.87 +0.6 691,763 - GFF956 0.87 -0.3 691,766 + GFF956 0.87 -0.1 691,937 + -0.2 691,937 + -0.3 691,937 + +0.4 691,937 + +0.0 691,937 + +0.5 691,937 + +0.2 691,937 + +0.2 691,937 + -0.1 691,938 - +0.3 691,938 - -0.6 691,938 - -0.2 691,938 - +0.2 691,938 - +0.9 691,938 - -1.4 691,938 - -0.4 691,961 + -1.4 691,961 + -0.3 691,961 + -2.6 691,961 + +0.4 691,961 + +0.7 691,962 - -1.5 691,962 - -0.4 691,962 - +0.1 691,962 - -0.2 691,962 - +1.2 691,962 - +0.3 691,962 - -0.3 691,962 - +0.2 691,962 - +0.3 691,962 - +0.0 692,110 + GFF957 0.11 +0.2 692,110 + GFF957 0.11 +0.3 692,110 + GFF957 0.11 -1.5 692,111 - GFF957 0.12 -0.0 692,111 - GFF957 0.12 +0.9 692,111 - GFF957 0.12 -0.5 692,111 - GFF957 0.12 +0.2 692,159 + GFF957 0.21 +0.2 692,159 + GFF957 0.21 -0.4 692,160 - GFF957 0.21 +0.7 692,160 - GFF957 0.21 +0.1 692,161 + GFF957 0.21 +0.8 692,161 + GFF957 0.21 -0.2 692,161 + GFF957 0.21 +0.2 692,161 + GFF957 0.21 +0.3 692,162 - GFF957 0.22 +0.8 692,162 - GFF957 0.22 +0.1 692,162 - GFF957 0.22 -0.3 692,162 - GFF957 0.22 -0.3 692,242 + GFF957 0.37 +0.3 692,243 - GFF957 0.37 +0.5 692,243 - GFF957 0.37 -0.2 692,404 + GFF957 0.69 -0.2 692,404 + GFF957 0.69 +0.5 692,404 + GFF957 0.69 -0.0 692,405 - GFF957 0.69 -0.1 692,405 - GFF957 0.69 +0.5 692,500 + GFF957 0.88 -0.2 692,500 + GFF957 0.88 -0.1 692,501 - GFF957 0.88 -0.3 692,501 - GFF957 0.88 -0.2 692,527 + +0.5 692,527 + +0.1 692,528 - +0.0 692,528 - -0.4 692,528 - -0.1 692,528 - -0.8 692,528 - -0.5 692,528 - +0.9 692,528 - +1.0 692,529 + -1.2 692,635 + -0.2 692,635 + -0.1 692,651 + +0.0 692,651 + +0.5 692,651 + +0.3 692,651 + -0.5 692,651 + -1.8 692,652 - +0.4 692,707 + -0.4 692,707 + +0.5 692,708 - -0.8 692,752 - -2.0 692,794 + -1.2 692,794 + -2.3 692,795 - -0.8 692,908 + +0.5 692,909 - -2.6 692,971 + -1.6 692,971 + -1.7 692,971 + -3.4 692,972 - -1.6
Or see this region's nucleotide sequence