Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF632 and GFF633 overlap by 4 nucleotides GFF633 and GFF634 are separated by 177 nucleotides GFF634 and GFF635 overlap by 4 nucleotides GFF635 and GFF636 are separated by 38 nucleotides
GFF632 - putative transporter, at 308,698 to 309,876
GFF632
GFF633 - probable membrane protein YPO3302, at 309,873 to 310,355
GFF633
GFF634 - tRNA dihydrouridine synthase B (EC 1.-.-.-), at 310,533 to 311,567
GFF634
GFF635 - DNA-binding protein Fis, at 311,564 to 311,800
GFF635
GFF636 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 311,839 to 313,425
GFF636
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 309.584 kb on + strand, within GFF632 at 309.584 kb on + strand, within GFF632 at 309.585 kb on - strand, within GFF632 at 309.585 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.929 kb on - strand, within GFF633 at 309.929 kb on - strand, within GFF633 at 309.929 kb on - strand, within GFF633 at 309.929 kb on - strand, within GFF633 at 309.937 kb on - strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.955 kb on + strand, within GFF633 at 309.956 kb on - strand, within GFF633 at 309.956 kb on - strand, within GFF633 at 310.336 kb on + strand at 310.336 kb on + strand at 310.336 kb on + strand at 310.336 kb on + strand at 310.336 kb on + strand at 310.337 kb on - strand at 310.337 kb on - strand at 310.337 kb on - strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.427 kb on + strand at 310.428 kb on - strand at 310.428 kb on - strand at 310.455 kb on + strand at 310.456 kb on - strand at 310.456 kb on - strand at 310.638 kb on + strand, within GFF634 at 310.638 kb on + strand, within GFF634 at 310.638 kb on + strand, within GFF634 at 310.785 kb on + strand, within GFF634 at 310.785 kb on + strand, within GFF634 at 310.785 kb on + strand, within GFF634 at 310.786 kb on - strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.070 kb on + strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.071 kb on - strand, within GFF634 at 311.340 kb on + strand, within GFF634 at 311.340 kb on + strand, within GFF634 at 311.340 kb on + strand, within GFF634 at 311.397 kb on + strand, within GFF634 at 311.397 kb on + strand, within GFF634 at 311.397 kb on + strand, within GFF634 at 311.397 kb on + strand, within GFF634 at 311.398 kb on - strand, within GFF634 at 311.398 kb on - strand, within GFF634 at 311.398 kb on - strand, within GFF634 at 311.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 309,584 + GFF632 0.75 -0.6 309,584 + GFF632 0.75 -0.4 309,585 - GFF632 0.75 -0.1 309,585 - GFF632 0.75 +0.1 309,624 - GFF632 0.79 -0.3 309,624 - GFF632 0.79 -0.2 309,624 - GFF632 0.79 +0.2 309,624 - GFF632 0.79 -1.2 309,929 - GFF633 0.12 +1.7 309,929 - GFF633 0.12 -0.1 309,929 - GFF633 0.12 -0.6 309,929 - GFF633 0.12 +0.4 309,937 - GFF633 0.13 -0.4 309,955 + GFF633 0.17 +0.8 309,955 + GFF633 0.17 +0.5 309,955 + GFF633 0.17 -0.1 309,955 + GFF633 0.17 +0.2 309,955 + GFF633 0.17 -1.9 309,955 + GFF633 0.17 +1.0 309,955 + GFF633 0.17 +1.2 309,955 + GFF633 0.17 +0.2 309,955 + GFF633 0.17 +1.0 309,956 - GFF633 0.17 +0.5 309,956 - GFF633 0.17 +0.4 310,336 + +0.2 310,336 + -0.8 310,336 + +0.6 310,336 + +0.2 310,336 + +0.4 310,337 - +0.3 310,337 - +1.3 310,337 - +0.4 310,427 + -0.7 310,427 + -0.5 310,427 + +0.2 310,427 + -0.5 310,427 + -0.1 310,427 + -0.4 310,428 - +0.2 310,428 - +0.7 310,455 + -0.0 310,456 - -0.0 310,456 - -0.4 310,638 + GFF634 0.10 +0.1 310,638 + GFF634 0.10 -0.4 310,638 + GFF634 0.10 +0.1 310,785 + GFF634 0.24 -0.2 310,785 + GFF634 0.24 +0.4 310,785 + GFF634 0.24 -0.3 310,786 - GFF634 0.24 -0.1 311,070 + GFF634 0.52 +0.1 311,070 + GFF634 0.52 -0.3 311,070 + GFF634 0.52 -0.5 311,070 + GFF634 0.52 -0.2 311,071 - GFF634 0.52 -0.0 311,071 - GFF634 0.52 -2.8 311,071 - GFF634 0.52 -0.0 311,071 - GFF634 0.52 -1.6 311,340 + GFF634 0.78 -0.7 311,340 + GFF634 0.78 -0.5 311,340 + GFF634 0.78 -0.3 311,397 + GFF634 0.83 -0.4 311,397 + GFF634 0.83 -0.7 311,397 + GFF634 0.83 -0.2 311,397 + GFF634 0.83 -0.2 311,398 - GFF634 0.84 +1.0 311,398 - GFF634 0.84 -0.7 311,398 - GFF634 0.84 -2.3 311,511 - +0.6
Or see this region's nucleotide sequence