Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5773

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,800,779	+		GFF5772	0.45	-0.5
2,800,780	-		GFF5772	0.45	-2.7
2,801,284	-		GFF5772	0.82	-2.4
2,801,506	-				-2.0
2,801,506	-				-1.7
2,801,506	-				-2.3
2,801,573	+				+0.2
2,801,573	+				-0.6
2,801,573	+				+1.4
2,801,573	+				+0.2
2,801,574	-				-0.0
2,801,574	-				+0.2
2,801,574	-				+0.1
2,801,574	-				-0.7
2,801,643	+				+0.1
2,801,643	+				-0.1
2,801,644	-				-0.4
2,801,644	-				-0.4
2,801,764	+				-0.0
2,802,085	+		GFF5773	0.29	-0.2
2,802,085	+		GFF5773	0.29	-2.2
2,802,086	-		GFF5773	0.29	-0.2
2,802,086	-		GFF5773	0.29	+0.4
2,802,236	+		GFF5773	0.39	-0.7
2,802,304	+		GFF5773	0.43	-0.6
2,802,304	+		GFF5773	0.43	-0.8
2,802,305	-		GFF5773	0.43	+2.1
2,802,964	+		GFF5773	0.86	+0.3
2,802,965	-		GFF5773	0.86	-1.1
2,802,965	-		GFF5773	0.86	+0.2
2,802,965	-		GFF5773	0.86	-1.3
2,802,965	-		GFF5773	0.86	+0.5
2,803,108	+				+0.1
2,803,357	-		GFF5774	0.38	-0.2
2,803,473	+		GFF5774	0.61	+0.4
2,803,761	+				+0.3
2,803,761	+				+0.7
2,803,761	+				-0.3
2,803,761	+				+1.3
2,803,761	+				-0.1
2,803,761	+				+0.5
2,803,762	-				+0.2
2,803,762	-				+0.1
2,803,762	-				-0.1
2,803,762	-				-0.5
2,803,762	-				-0.4
2,803,762	-				+1.1
2,803,762	-				-0.2
2,803,762	-				+1.1