Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5728

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,755,955	+		GFF5726	0.80	-0.6
2,755,956	-		GFF5726	0.80	-1.3
2,755,956	-		GFF5726	0.80	-1.3
2,756,112	-				-0.0
2,756,112	-				-0.2
2,756,231	-		GFF5727	0.13	-0.1
2,756,263	+		GFF5727	0.19	-0.5
2,756,264	-		GFF5727	0.19	-0.7
2,756,264	-		GFF5727	0.19	+1.0
2,756,266	+		GFF5727	0.19	+0.1
2,756,267	-		GFF5727	0.20	+0.2
2,756,267	-		GFF5727	0.20	-1.0
2,756,293	+		GFF5727	0.24	-1.5
2,756,293	+		GFF5727	0.24	-0.3
2,756,300	-		GFF5727	0.26	+0.3
2,756,402	-		GFF5727	0.44	+0.1
2,756,465	-		GFF5727	0.56	-0.6
2,756,548	+		GFF5727	0.71	-1.2
2,756,742	+				-0.3
2,756,743	-				+0.0
2,756,743	-				+0.2
2,756,743	-				+0.3
2,756,743	-				+1.0
2,757,043	-		GFF5728	0.26	+0.8
2,757,487	-		GFF5728	0.61	-0.6
2,758,259	+		GFF5729	0.20	-0.2
2,758,260	-		GFF5729	0.20	-0.8
2,758,260	-		GFF5729	0.20	+0.3
2,758,553	+		GFF5729	0.42	-0.3
2,758,868	+		GFF5729	0.65	+0.5
2,758,869	-		GFF5729	0.65	+0.2
2,758,946	-		GFF5729	0.71	+0.2
2,758,946	-		GFF5729	0.71	-1.0