Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF556

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF554 and GFF555 are separated by 5 nucleotidesGFF555 and GFF556 overlap by 4 nucleotidesGFF556 and GFF557 are separated by 2 nucleotides GFF554 - Cell division protein MraZ, at 223,644 to 224,009 GFF554 GFF555 - rRNA small subunit methyltransferase H, at 224,015 to 224,941 GFF555 GFF556 - Cell division protein FtsL, at 224,938 to 225,243 GFF556 GFF557 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 225,246 to 226,979 GFF557 Position (kb) 224 225 226Strain fitness (log2 ratio) -1 0 1at 223.941 kb on + strand, within GFF554at 223.941 kb on + strand, within GFF554at 223.941 kb on + strand, within GFF554at 223.941 kb on + strand, within GFF554at 224.096 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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223,941 + GFF554 0.81 +0.5
223,941 + GFF554 0.81 +0.5
223,941 + GFF554 0.81 +0.9
223,941 + GFF554 0.81 -0.1
224,096 + -0.6

Or see this region's nucleotide sequence