Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5522

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,525,002	+		GFF5521	0.56	+0.1
2,525,003	-		GFF5521	0.56	-0.6
2,525,572	+				-0.1
2,525,573	-				-0.4
2,526,491	+		GFF5522	0.32	+0.0
2,526,492	-		GFF5522	0.32	-0.1
2,526,492	-		GFF5522	0.32	+0.2
2,526,542	+		GFF5522	0.34	-0.2
2,526,542	+		GFF5522	0.34	+0.3
2,526,543	-		GFF5522	0.34	+0.5
2,526,584	+		GFF5522	0.36	-0.7
2,526,584	+		GFF5522	0.36	+0.1
2,527,155	-		GFF5522	0.60	-0.5
2,527,160	+		GFF5522	0.60	+0.1
2,527,160	+		GFF5522	0.60	-0.3
2,527,160	+		GFF5522	0.60	-0.2
2,527,161	-		GFF5522	0.60	-1.7
2,527,808	+		GFF5522	0.88	-0.9
2,527,808	+		GFF5522	0.88	-0.0
2,527,809	-		GFF5522	0.88	-0.5
2,528,228	-				+0.5
2,528,228	-				-0.7
2,528,901	+				+0.7
2,528,901	+				+0.3
2,528,901	+				-0.0
2,528,901	+				-0.4
2,528,901	+				+0.0
2,528,902	-				+0.2
2,528,968	+				-0.5
2,528,968	+				-1.0
2,528,969	-				-0.1
2,528,969	-				-0.5
2,528,970	+				-0.1