Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5483

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,483,382	+		GFF5482	0.30	+0.2
2,483,383	-		GFF5482	0.30	+0.5
2,483,502	+		GFF5482	0.42	-0.4
2,483,565	+		GFF5482	0.48	+0.2
2,483,566	-		GFF5482	0.48	-0.2
2,483,643	+		GFF5482	0.56	+0.2
2,483,979	+				+0.5
2,483,979	+				-0.5
2,483,979	+				+0.5
2,483,980	-				-0.2
2,483,980	-				-0.3
2,483,980	-				-0.2
2,483,980	-				+0.0
2,484,060	+				+0.3
2,484,062	+				-0.5
2,484,062	+				+0.2
2,484,062	+				+0.0
2,484,063	-				+0.2
2,484,063	-				-0.5
2,484,552	+		GFF5483	0.36	-0.4
2,484,553	-		GFF5483	0.36	+0.3
2,484,553	-		GFF5483	0.36	+1.1
2,484,553	-		GFF5483	0.36	+0.2
2,484,553	-		GFF5483	0.36	+0.4
2,484,553	-		GFF5483	0.36	-0.3
2,484,735	+		GFF5483	0.55	-0.1
2,484,736	-		GFF5483	0.55	+0.5
2,484,736	-		GFF5483	0.55	-0.6
2,484,736	-		GFF5483	0.55	+0.1
2,485,065	+				+0.5
2,485,065	+				+0.2
2,485,066	-				-0.3
2,485,338	-		GFF5484	0.28	-2.4
2,485,831	-				+0.1