Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5436

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,438,442	-		GFF5435	0.15	-0.2
2,439,604	+		GFF5436	0.67	+0.5
2,439,605	-		GFF5436	0.67	+0.8
2,439,605	-		GFF5436	0.67	+0.5
2,439,848	+				+0.4
2,439,848	+				-0.3
2,439,849	-				-0.2
2,439,864	+				-0.2
2,439,864	+				-0.7
2,439,865	-				+0.5
2,439,865	-				-0.4
2,439,889	+				+0.2
2,439,889	+				-0.2
2,439,893	+				-0.4
2,439,894	-				+1.1
2,439,921	-				+0.5
2,439,921	-				+0.9
2,439,921	-				+0.7
2,439,921	-				-0.1
2,439,992	+				-1.5
2,439,993	-				-0.7
2,440,368	-		GFF5437	0.37	+0.2
2,440,368	-		GFF5437	0.37	+0.6