Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5110

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,121,168	+		GFF5108	0.39	-1.2
2,121,267	+		GFF5108	0.54	+0.1
2,121,268	-		GFF5108	0.54	+0.0
2,121,268	-		GFF5108	0.54	-0.1
2,121,268	-		GFF5108	0.54	+0.8
2,121,767	-		GFF5109	0.58	+0.4
2,121,965	+				+0.4
2,121,965	+				-0.5
2,121,965	+				-0.5
2,122,008	+				-1.4
2,122,008	+				+0.1
2,122,009	-				-1.4
2,122,009	-				-1.3
2,122,048	-				-1.5
2,122,048	-				-0.6
2,122,051	-				-1.5
2,122,051	-				-1.1
2,122,101	+		GFF5110	0.12	-1.0
2,122,204	-		GFF5110	0.24	-0.7
2,122,204	-		GFF5110	0.24	-1.4
2,122,260	+		GFF5110	0.31	-1.1
2,122,261	-		GFF5110	0.31	-1.8
2,122,261	-		GFF5110	0.31	-0.6
2,122,261	-		GFF5110	0.31	-1.7
2,122,356	+		GFF5110	0.42	-1.3
2,122,515	+		GFF5110	0.60	-1.0
2,122,515	+		GFF5110	0.60	-1.7
2,122,515	+		GFF5110	0.60	-1.1
2,122,515	+		GFF5110	0.60	-1.6
2,122,515	+		GFF5110	0.60	-1.6
2,122,516	-		GFF5110	0.60	-2.0
2,122,516	-		GFF5110	0.60	-1.0
2,122,662	+		GFF5110	0.77	-2.4
2,122,738	-		GFF5110	0.86	-1.1
2,122,738	-		GFF5110	0.86	-1.1
2,122,738	-		GFF5110	0.86	-0.1
2,122,846	+				-0.4
2,122,911	+				+0.2
2,122,912	-				-0.1
2,122,912	-				-0.1
2,123,054	+		GFF5111	0.14	-0.3
2,123,798	+		GFF5111	0.69	+0.1
2,123,799	-		GFF5111	0.69	+0.3