Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5054

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
2,069,370	-				-0.6
2,069,372	-				-0.1
2,069,374	-				+0.2
2,069,387	+				+0.8
2,069,416	-				+0.6
2,069,472	+				+0.1
2,069,474	+				-1.5
2,069,493	+				-0.5
2,069,493	+				+1.1
2,069,493	+				-0.7
2,069,494	-				-0.1
2,069,494	-				-0.1
2,069,494	-				-0.1
2,069,494	-				-0.0
2,069,913	+		GFF5053	0.51	+0.5
2,070,040	+		GFF5053	0.72	+0.9
2,070,040	+		GFF5053	0.72	-0.3
2,070,041	-		GFF5053	0.72	+0.1
2,070,041	-		GFF5053	0.72	-0.3
2,070,229	+				-0.1
2,070,229	+				+0.2
2,070,728	+		GFF5054	0.46	+0.1
2,070,728	+		GFF5054	0.46	-0.7
2,070,728	+		GFF5054	0.46	-0.2
2,070,728	+		GFF5054	0.46	-0.4
2,070,729	-		GFF5054	0.46	+0.3
2,070,729	-		GFF5054	0.46	+0.0
2,070,729	-		GFF5054	0.46	+0.2
2,071,145	+		GFF5054	0.88	-0.7
2,071,154	+		GFF5054	0.89	+0.5
2,071,154	+		GFF5054	0.89	+0.1
2,071,154	+		GFF5054	0.89	+0.0
2,071,154	+		GFF5054	0.89	+0.1
2,071,154	+		GFF5054	0.89	-0.2
2,071,154	+		GFF5054	0.89	-0.3
2,071,154	+		GFF5054	0.89	-0.7
2,071,154	+		GFF5054	0.89	-0.7
2,071,154	+		GFF5054	0.89	-0.4
2,071,155	-		GFF5054	0.89	-0.9
2,071,155	-		GFF5054	0.89	-0.3
2,071,155	-		GFF5054	0.89	+0.1
2,071,155	-		GFF5054	0.89	-0.4
2,071,328	-				-0.1
2,071,436	-		GFF5055	0.10	-0.6
2,071,439	-		GFF5055	0.11	+0.2
2,071,520	-		GFF5055	0.17	-1.1
2,071,715	-		GFF5055	0.34	-0.4
2,071,978	+		GFF5055	0.56	-0.1
2,071,979	-		GFF5055	0.56	+0.2
2,071,979	-		GFF5055	0.56	-0.9
2,071,979	-		GFF5055	0.56	-0.2
2,072,228	-		GFF5055	0.77	-0.0