Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4872

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,877,776	+		GFF4870	0.85	+0.2
1,877,776	+		GFF4870	0.85	-0.1
1,877,777	-		GFF4870	0.85	-0.3
1,877,952	+				-0.8
1,877,953	-				-0.1
1,877,953	-				+0.0
1,877,953	-				+0.3
1,877,953	-				+0.7
1,877,953	-				-0.0
1,877,953	-				+0.1
1,877,953	-				-0.1
1,877,973	+				-0.0
1,878,752	+				+0.3
1,878,752	+				-0.3
1,878,752	+				-0.1
1,878,753	-				+1.1
1,878,803	+				+0.6
1,878,804	-				-0.3
1,878,892	+				+0.3
1,878,892	+				-0.4
1,878,893	-				+0.0
1,879,426	+		GFF4872	0.32	+0.6
1,879,426	+		GFF4872	0.32	+1.3
1,879,426	+		GFF4872	0.32	+1.9
1,879,426	+		GFF4872	0.32	-1.5
1,879,426	+		GFF4872	0.32	+0.3
1,879,426	+		GFF4872	0.32	-0.1
1,879,426	+		GFF4872	0.32	-0.2
1,879,426	+		GFF4872	0.32	+0.9
1,879,426	+		GFF4872	0.32	-0.7
1,879,426	+		GFF4872	0.32	-0.5
1,879,426	+		GFF4872	0.32	+0.7
1,879,426	+		GFF4872	0.32	+0.1
1,879,426	+		GFF4872	0.32	+0.1
1,879,426	+		GFF4872	0.32	-0.1
1,879,426	+		GFF4872	0.32	-0.2
1,879,427	-		GFF4872	0.32	+0.2
1,880,470	+		GFF4872	0.83	+0.4
1,880,470	+		GFF4872	0.83	-0.2
1,880,470	+		GFF4872	0.83	+2.0
1,880,470	+		GFF4872	0.83	+0.7
1,880,470	+		GFF4872	0.83	+0.6
1,880,470	+		GFF4872	0.83	+1.2
1,880,470	+		GFF4872	0.83	-0.6
1,880,470	-		GFF4872	0.83	+0.0
1,880,471	-		GFF4872	0.83	-0.1
1,880,471	-		GFF4872	0.83	-0.3
1,880,471	-		GFF4872	0.83	-0.1
1,880,471	-		GFF4872	0.83	+0.3
1,880,471	-		GFF4872	0.83	+0.2
1,880,471	-		GFF4872	0.83	+0.7
1,880,471	-		GFF4872	0.83	+0.6
1,880,471	-		GFF4872	0.83	+0.8
1,880,471	-		GFF4872	0.83	-0.0
1,880,471	-		GFF4872	0.83	-0.2
1,880,471	-		GFF4872	0.83	+0.6
1,880,623	+				+0.5
1,880,623	+				-0.2
1,880,623	+				-0.3
1,880,624	-				-0.7
1,880,624	-				+0.0
1,880,925	+				+0.3
1,880,925	+				+0.8
1,880,925	+				+0.5
1,881,176	+		GFF4873	0.27	-0.2
1,881,177	-		GFF4873	0.27	-0.3
1,881,353	+		GFF4873	0.50	+0.1
1,881,353	+		GFF4873	0.50	+0.5
1,881,353	+		GFF4873	0.50	+0.0
1,881,353	+		GFF4873	0.50	+0.2
1,881,353	+		GFF4873	0.50	-0.1
1,881,354	-		GFF4873	0.50	-1.7
1,881,354	-		GFF4873	0.50	+0.9
1,881,354	-		GFF4873	0.50	+0.1
1,881,401	+		GFF4873	0.57	+0.5
1,881,401	+		GFF4873	0.57	+0.2
1,881,401	+		GFF4873	0.57	+0.9
1,881,401	+		GFF4873	0.57	-0.4
1,881,401	+		GFF4873	0.57	+0.1
1,881,401	+		GFF4873	0.57	+0.4
1,881,401	+		GFF4873	0.57	+0.2
1,881,402	-		GFF4873	0.57	-0.2
1,881,402	-		GFF4873	0.57	+1.8
1,881,402	-		GFF4873	0.57	-0.3
1,881,402	-		GFF4873	0.57	-0.1
1,881,402	-		GFF4873	0.57	+1.2
1,881,402	-		GFF4873	0.57	-0.4
1,881,402	-		GFF4873	0.57	+0.2
1,881,581	+		GFF4873	0.80	+0.1
1,881,581	+		GFF4873	0.80	-0.7
1,881,581	+		GFF4873	0.80	+0.5
1,881,581	+		GFF4873	0.80	-0.0
1,881,582	-		GFF4873	0.80	+0.2
1,881,582	-		GFF4873	0.80	-1.2
1,881,582	-		GFF4873	0.80	-0.3
1,881,757	+				-0.2
1,881,758	-				-0.4