Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4791

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,801,879	+				+0.5
1,801,977	-				+0.2
1,802,316	-		GFF4790	0.45	-0.4
1,802,654	+		GFF4790	0.83	-0.1
1,802,654	+		GFF4790	0.83	-0.4
1,802,654	+		GFF4790	0.83	+1.0
1,802,654	+		GFF4790	0.83	-1.2
1,802,655	-		GFF4790	0.84	-0.1
1,802,742	-				-0.3
1,802,742	-				+2.8
1,802,742	-				-1.0
1,803,000	+		GFF4791	0.21	-0.1
1,803,000	+		GFF4791	0.21	+0.3
1,803,000	+		GFF4791	0.21	-0.1
1,803,000	+		GFF4791	0.21	+0.5
1,803,000	+		GFF4791	0.21	+0.0
1,803,000	+		GFF4791	0.21	-0.0
1,803,099	+		GFF4791	0.31	+0.0
1,803,100	-		GFF4791	0.31	+0.5
1,803,231	+		GFF4791	0.45	+0.2
1,803,360	+		GFF4791	0.58	+0.2
1,803,360	+		GFF4791	0.58	-0.1
1,803,360	+		GFF4791	0.58	+0.3
1,803,360	+		GFF4791	0.58	+0.4
1,803,361	-		GFF4791	0.58	-0.3
1,803,361	-		GFF4791	0.58	+0.3
1,803,690	+				-0.5
1,803,690	+				-0.6
1,803,690	+				+0.7
1,803,690	+				-1.0
1,803,690	+				+1.5
1,803,690	-				-0.3
1,803,691	-				+0.1
1,803,727	-				+0.7
1,803,928	+				-1.2
1,804,281	+		GFF4792	0.38	-0.6
1,804,282	-		GFF4792	0.38	-0.3
1,804,302	+		GFF4792	0.43	+0.1
1,804,302	+		GFF4792	0.43	+0.5
1,804,302	+		GFF4792	0.43	+0.1
1,804,302	+		GFF4792	0.43	+1.4
1,804,303	-		GFF4792	0.43	-0.3
1,804,303	-		GFF4792	0.43	-0.0
1,804,303	-		GFF4792	0.43	+0.6
1,804,303	-		GFF4792	0.43	+0.5
1,804,536	+				+0.7
1,804,536	+				+0.0
1,804,537	-				+0.2
1,804,537	-				-0.2