Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4781

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,790,233	+		GFF4779	0.84	-0.3
1,790,233	+		GFF4779	0.84	+0.3
1,790,233	+		GFF4779	0.84	-0.8
1,790,234	-		GFF4779	0.84	-0.4
1,790,234	-		GFF4779	0.84	-0.4
1,790,257	+		GFF4779	0.86	+0.0
1,790,258	-		GFF4779	0.86	-0.7
1,790,483	-				+0.4
1,790,484	+				-0.1
1,790,485	-				+0.8
1,790,559	-				-0.2
1,790,576	+		GFF4780	0.12	-0.3
1,790,576	+		GFF4780	0.12	+0.4
1,790,577	-		GFF4780	0.12	+0.5
1,790,577	-		GFF4780	0.12	+0.3
1,790,577	-		GFF4780	0.12	-0.3
1,790,960	+		GFF4780	0.70	-0.3
1,790,960	+		GFF4780	0.70	-0.6
1,790,961	-		GFF4780	0.70	-0.0
1,790,961	-		GFF4780	0.70	+0.0
1,791,190	+				-0.0
1,791,208	+				-0.1
1,791,209	-				-1.1
1,791,209	-				+0.2
1,791,209	-				+0.4
1,791,209	-				-1.1
1,791,209	-				-0.1
1,791,232	+				-0.4
1,791,232	+				-0.5
1,791,232	+				-0.1
1,791,232	+				+0.2
1,791,232	+				-0.2
1,791,232	+				-0.2
1,791,232	+				+0.1
1,791,233	-				+1.5
1,791,233	-				-0.1
1,791,233	-				-1.8
1,791,233	-				-1.2
1,791,281	-				-0.6
1,791,406	+		GFF4781	0.16	-0.8
1,791,406	+		GFF4781	0.16	-0.3
1,791,436	+		GFF4781	0.18	-0.1
1,791,436	+		GFF4781	0.18	-0.6
1,791,436	+		GFF4781	0.18	-0.2
1,791,436	+		GFF4781	0.18	-0.2
1,791,436	+		GFF4781	0.18	+0.5
1,791,436	+		GFF4781	0.18	+0.8
1,791,436	+		GFF4781	0.18	+0.2
1,791,436	+		GFF4781	0.18	+0.2
1,791,436	+		GFF4781	0.18	+0.1
1,791,436	+		GFF4781	0.18	+0.1
1,791,436	+		GFF4781	0.18	+0.0
1,791,437	-		GFF4781	0.18	+1.8
1,791,437	-		GFF4781	0.18	+0.5
1,791,437	-		GFF4781	0.18	+0.1
1,791,437	-		GFF4781	0.18	+0.3
1,791,437	-		GFF4781	0.18	+0.6
1,791,703	+		GFF4781	0.36	-0.5
1,792,474	+		GFF4781	0.86	+1.2
1,792,475	-		GFF4781	0.87	-0.5
1,793,057	+				-0.3
1,793,057	+				+1.0
1,793,057	+				-1.5
1,793,058	-				-0.6