Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4623

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,570,005	-				+0.3
1,570,158	+				+0.5
1,570,159	-				+0.3
1,570,165	-				-0.1
1,570,468	-				-0.8
1,570,468	-				-0.5
1,570,799	-				+0.1
1,571,050	+				+0.2
1,571,346	+		GFF4623	0.49	+0.5
1,571,346	+		GFF4623	0.49	+0.9
1,571,383	-		GFF4623	0.54	-0.9
1,571,505	+		GFF4623	0.70	-0.1
1,571,506	-		GFF4623	0.70	+0.8
1,571,610	+		GFF4623	0.85	+0.1
1,571,611	-		GFF4623	0.85	+0.3
1,571,649	-		GFF4623	0.90	+0.0
1,571,867	+		GFF4624	0.19	+1.0
1,572,171	-		GFF4624	0.65	+0.7
1,572,171	-		GFF4624	0.65	+0.1
1,572,242	+		GFF4624	0.76	-0.9
1,572,242	+		GFF4624	0.76	+0.4
1,572,242	+		GFF4624	0.76	+0.5
1,572,242	+		GFF4624	0.76	-0.1
1,572,243	-		GFF4624	0.76	-0.2
1,572,243	-		GFF4624	0.76	-0.0
1,572,314	+		GFF4624	0.87	+0.1
1,572,352	-				-0.0
1,572,372	-				-0.3
1,572,585	+				+0.2
1,572,585	+				+0.2
1,572,586	-				-0.1
1,572,586	-				-0.1
1,572,586	-				+1.1
1,572,587	+				-0.0
1,572,713	+				-0.3
1,572,713	+				-0.4