Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF461 and GFF462 are separated by 98 nucleotides GFF462 and GFF463 overlap by 4 nucleotides GFF463 and GFF464 are separated by 98 nucleotides
GFF461 - Transcriptional regulator, LysR family, at 126,066 to 126,998
GFF461
GFF462 - FIG074102: hypothetical protein, at 127,097 to 127,900
GFF462
GFF463 - Transcriptional regulator, GntR family, at 127,897 to 128,553
GFF463
GFF464 - Isochorismatase (EC 3.3.2.1), at 128,652 to 129,320
GFF464
Position (kb) 127
128 Strain fitness (log2 ratio) -1
0
1
2 at 126.188 kb on - strand, within GFF461 at 126.196 kb on + strand, within GFF461 at 126.196 kb on + strand, within GFF461 at 126.197 kb on - strand, within GFF461 at 126.424 kb on + strand, within GFF461 at 126.425 kb on - strand, within GFF461 at 127.041 kb on + strand at 127.042 kb on - strand at 127.317 kb on + strand, within GFF462 at 127.328 kb on + strand, within GFF462 at 127.329 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.452 kb on - strand, within GFF462 at 127.605 kb on - strand, within GFF462 at 128.343 kb on - strand, within GFF463 at 128.550 kb on - strand at 128.761 kb on + strand, within GFF464 at 128.761 kb on + strand, within GFF464 at 128.761 kb on + strand, within GFF464 at 128.762 kb on - strand, within GFF464
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 126,188 - GFF461 0.13 -0.3 126,196 + GFF461 0.14 -0.3 126,196 + GFF461 0.14 +0.9 126,197 - GFF461 0.14 +0.2 126,424 + GFF461 0.38 -0.3 126,425 - GFF461 0.38 -0.3 127,041 + -0.4 127,042 - +0.0 127,317 + GFF462 0.27 -0.3 127,328 + GFF462 0.29 +1.0 127,329 - GFF462 0.29 +0.0 127,452 - GFF462 0.44 +1.0 127,452 - GFF462 0.44 +0.7 127,452 - GFF462 0.44 -0.1 127,605 - GFF462 0.63 -0.2 128,343 - GFF463 0.68 -0.4 128,550 - +0.4 128,761 + GFF464 0.16 -0.2 128,761 + GFF464 0.16 -0.0 128,761 + GFF464 0.16 +0.0 128,762 - GFF464 0.16 +2.1
Or see this region's nucleotide sequence