Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4609

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,552,728	+		GFF4608	0.69	+0.2
1,552,728	+		GFF4608	0.69	+0.2
1,552,729	-		GFF4608	0.69	-0.2
1,552,997	+				-0.9
1,552,997	+				-0.3
1,552,997	+				+0.0
1,552,997	+				+0.5
1,552,997	+				+0.3
1,552,997	+				-0.6
1,552,997	+				+0.5
1,553,073	+				+0.2
1,553,074	-				-0.5
1,553,074	-				-0.5
1,553,192	+				+0.6
1,553,193	-				-0.3
1,553,465	+				-0.6
1,553,951	+		GFF4609	0.20	-0.4
1,553,951	+		GFF4609	0.20	+2.3
1,553,952	-		GFF4609	0.20	-0.5
1,553,952	-		GFF4609	0.20	+1.0
1,554,130	+		GFF4609	0.27	+0.4
1,554,130	+		GFF4609	0.27	-0.2
1,554,131	-		GFF4609	0.27	-0.4
1,554,195	-		GFF4609	0.29	+0.2
1,554,292	-		GFF4609	0.33	-1.0
1,554,983	+		GFF4609	0.58	-0.3
1,554,984	-		GFF4609	0.58	+1.7
1,554,984	-		GFF4609	0.58	-0.1
1,554,995	+		GFF4609	0.58	+0.1
1,555,241	+		GFF4609	0.67	+0.1
1,555,241	+		GFF4609	0.67	-1.3
1,555,242	-		GFF4609	0.67	-0.2
1,555,271	+		GFF4609	0.69	+0.1
1,555,271	+		GFF4609	0.69	+0.8
1,555,271	+		GFF4609	0.69	+0.3
1,555,271	+		GFF4609	0.69	-0.2
1,555,271	+		GFF4609	0.69	-0.7
1,555,271	+		GFF4609	0.69	-0.3
1,555,271	+		GFF4609	0.69	+0.5
1,555,271	+		GFF4609	0.69	-0.1
1,555,271	+		GFF4609	0.69	+0.6
1,555,271	+		GFF4609	0.69	-0.5
1,555,271	+		GFF4609	0.69	-0.0
1,555,271	+		GFF4609	0.69	+0.0
1,555,272	-		GFF4609	0.69	-0.3
1,555,272	-		GFF4609	0.69	+0.5
1,555,272	-		GFF4609	0.69	+0.2
1,555,272	-		GFF4609	0.69	-0.2
1,555,272	-		GFF4609	0.69	-0.4
1,555,272	-		GFF4609	0.69	-0.5
1,555,272	-		GFF4609	0.69	-0.4
1,555,272	-		GFF4609	0.69	+0.6
1,555,272	-		GFF4609	0.69	+0.5
1,555,272	-		GFF4609	0.69	-0.3
1,555,272	-		GFF4609	0.69	+0.2
1,555,272	-		GFF4609	0.69	+1.3
1,555,272	-		GFF4609	0.69	-0.1
1,555,272	-		GFF4609	0.69	-0.9
1,555,272	-		GFF4609	0.69	-0.2
1,555,272	-		GFF4609	0.69	-0.2
1,555,430	+		GFF4609	0.74	-0.6
1,555,430	+		GFF4609	0.74	-0.4
1,555,431	-		GFF4609	0.74	+0.3
1,555,431	-		GFF4609	0.74	-1.0
1,555,431	-		GFF4609	0.74	+0.4
1,555,528	+		GFF4609	0.78	+0.3
1,555,754	+		GFF4609	0.86	+0.5
1,555,754	+		GFF4609	0.86	-0.7
1,555,755	-		GFF4609	0.86	+0.3
1,555,755	-		GFF4609	0.86	-0.2
1,555,755	-		GFF4609	0.86	-1.7
1,555,821	+		GFF4609	0.89	+0.2
1,555,821	+		GFF4609	0.89	-0.7
1,555,821	+		GFF4609	0.89	-0.9
1,555,822	-		GFF4609	0.89	+0.5
1,555,822	-		GFF4609	0.89	+2.1
1,555,822	-		GFF4609	0.89	-0.1
1,555,822	-		GFF4609	0.89	+0.3
1,555,838	+		GFF4609	0.89	+0.1
1,555,838	+		GFF4609	0.89	-0.4
1,555,839	-		GFF4609	0.89	-1.3
1,555,839	-		GFF4609	0.89	-0.0
1,555,839	-		GFF4609	0.89	-1.0
1,555,942	+				-0.0
1,555,942	+				-0.7
1,555,943	-				+1.0
1,555,943	-				+0.8
1,555,943	-				+0.2
1,555,943	-				+0.3
1,555,943	-				+0.1
1,555,943	-				-0.1
1,555,943	-				-1.3
1,556,047	+				+0.2
1,556,047	+				+0.1
1,556,048	-				-0.4
1,556,079	-				-0.2
1,556,079	-				+0.8
1,556,138	+				-0.2
1,556,138	+				+0.3
1,556,139	-				-0.5
1,556,139	-				-1.2
1,556,148	+				+0.2
1,556,149	-				+1.9
1,556,248	-				+0.2
1,556,333	+				-0.7
1,556,496	+				-0.1
1,556,496	+				+0.1
1,556,497	-				+0.6
1,556,588	+				-0.1
1,556,588	+				+0.1
1,556,588	+				+0.4
1,556,588	+				-0.7
1,556,588	+				-0.8
1,556,588	+				-0.5
1,556,589	-				+0.4
1,556,671	+				+0.2
1,556,671	+				+0.1
1,556,671	+				-0.1
1,556,672	-				-0.1
1,556,672	-				-0.3
1,556,672	-				-0.1
1,556,711	+				+0.5
1,556,712	-				+0.0
1,556,712	-				+0.2
1,556,712	-				+0.2
1,556,714	+				+0.0
1,556,714	+				+2.1
1,556,714	+				+0.2
1,556,715	-				-0.1
1,556,715	-				-0.5
1,556,715	-				-0.2
1,556,715	-				+0.1
1,556,810	+				-0.2
1,556,810	+				-0.8
1,556,810	+				+0.2
1,556,810	+				-0.6
1,556,810	+				-0.1
1,556,810	+				+0.1
1,556,810	+				-0.1
1,556,810	+				+0.1
1,556,811	-				+0.8
1,556,811	-				+0.8
1,556,811	-				-0.5
1,556,811	-				+0.5
1,556,811	-				+1.0
1,556,811	-				+0.0
1,556,870	+				+0.0
1,556,870	+				+1.3
1,556,870	+				-1.1
1,556,871	-				+1.3
1,556,881	+				+0.1
1,556,881	+				-0.2
1,556,881	+				+0.8
1,556,881	+				-0.1
1,556,882	-				+1.0
1,556,940	+				+0.3
1,556,996	+				-0.4
1,556,996	+				+1.0
1,556,997	-				+0.1
1,556,997	-				+0.0
1,556,997	-				+0.3
1,556,997	-				-0.4
1,556,997	-				-0.4
1,556,997	-				+0.3
1,556,997	-				-0.1
1,557,004	+				-0.2
1,557,004	+				-0.2
1,557,004	+				+0.3
1,557,004	+				-0.2
1,557,004	+				-0.2
1,557,004	+				-0.4
1,557,004	+				+1.7
1,557,004	+				+0.8
1,557,004	+				-0.2
1,557,004	+				-0.3
1,557,004	+				+0.3
1,557,004	+				-0.5
1,557,004	+				+0.7
1,557,004	+				-0.3
1,557,004	+				+0.5
1,557,004	+				-0.2
1,557,005	-				-0.3
1,557,005	-				+0.7
1,557,005	-				+0.0
1,557,005	-				-0.4
1,557,005	-				+1.0
1,557,005	-				-0.6
1,557,005	-				-0.1