Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4387

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,313,425	+		GFF4384	0.20	-1.4
1,313,425	+		GFF4384	0.20	+0.0
1,313,426	-		GFF4384	0.20	+0.3
1,313,914	+				-1.0
1,313,914	+				+0.0
1,313,930	+				-0.8
1,313,931	-				-0.3
1,313,939	+				-0.8
1,313,940	-				+0.5
1,314,416	+				+0.2
1,314,416	+				+1.3
1,314,416	+				+0.1
1,314,530	+				-0.1
1,314,530	+				-0.3
1,314,531	-				+1.2
1,314,531	-				+1.0
1,314,531	-				+1.1
1,314,754	+		GFF4387	0.22	+0.7
1,314,754	+		GFF4387	0.22	-0.9
1,314,755	-		GFF4387	0.22	-0.2
1,314,755	-		GFF4387	0.22	-0.5
1,314,755	-		GFF4387	0.22	-0.0
1,314,755	-		GFF4387	0.22	+0.0
1,314,883	+		GFF4387	0.30	+0.2
1,314,883	+		GFF4387	0.30	+0.5
1,314,884	-		GFF4387	0.30	+0.5
1,314,884	-		GFF4387	0.30	-0.2
1,314,884	-		GFF4387	0.30	-0.2
1,315,238	-		GFF4387	0.53	+0.1
1,315,516	+		GFF4387	0.70	+0.6
1,315,596	-		GFF4387	0.75	-0.3
1,315,751	+		GFF4387	0.85	+1.1
1,315,752	+		GFF4387	0.85	-0.0
1,315,752	+		GFF4387	0.85	+0.2
1,315,860	-				-0.2
1,316,048	+				-0.3
1,316,049	-				+0.7
1,316,067	+				-0.5
1,316,068	-				+0.6
1,316,322	-		GFF4388	0.42	+0.6
1,316,384	+		GFF4388	0.50	+0.9
1,316,385	-		GFF4388	0.50	+1.0
1,316,427	-		GFF4388	0.56	+0.4
1,316,427	-		GFF4388	0.56	+0.0
1,316,433	+		GFF4388	0.56	+0.4
1,316,479	+		GFF4388	0.62	-0.0
1,316,529	+		GFF4388	0.69	+0.1
1,316,530	-		GFF4388	0.69	-0.3
1,316,530	-		GFF4388	0.69	-0.3
1,316,530	-		GFF4388	0.69	+1.1
1,316,533	+		GFF4388	0.70	+0.5
1,316,533	+		GFF4388	0.70	+0.7
1,316,534	-		GFF4388	0.70	+0.3
1,316,534	-		GFF4388	0.70	-0.5
1,316,747	+				+0.5
1,316,747	+				-0.5
1,316,849	-				-0.3
1,316,873	+				-0.5
1,316,907	+				-0.4
1,316,908	-				-0.7
1,316,954	-				+0.5
1,316,954	-				-0.8
1,316,954	-				+2.0
1,316,954	-				+1.0