Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4378

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,307,483	+		GFF4377	0.31	+0.5
1,307,484	-		GFF4377	0.31	-1.5
1,307,516	+		GFF4377	0.34	-0.1
1,307,516	+		GFF4377	0.34	+0.5
1,307,516	+		GFF4377	0.34	-0.2
1,307,516	+		GFF4377	0.34	-1.5
1,307,517	-		GFF4377	0.34	+0.5
1,307,517	-		GFF4377	0.34	+0.4
1,307,518	+		GFF4377	0.34	-0.0
1,307,519	-		GFF4377	0.34	-0.6
1,307,519	-		GFF4377	0.34	-0.3
1,307,628	+		GFF4377	0.45	+2.1
1,307,628	+		GFF4377	0.45	-0.4
1,307,628	+		GFF4377	0.45	-0.0
1,307,629	-		GFF4377	0.45	+0.3
1,307,629	-		GFF4377	0.45	-0.1
1,307,629	-		GFF4377	0.45	-0.2
1,307,629	-		GFF4377	0.45	+0.7
1,307,652	+		GFF4377	0.47	+1.0
1,307,653	-		GFF4377	0.47	+0.2
1,307,670	+		GFF4377	0.49	-0.5
1,307,670	+		GFF4377	0.49	+1.5
1,307,671	-		GFF4377	0.49	+0.1
1,307,671	-		GFF4377	0.49	+0.3
1,307,704	+		GFF4377	0.52	+0.3
1,307,811	+		GFF4377	0.62	+0.7
1,307,812	-		GFF4377	0.62	+0.3
1,307,835	-		GFF4377	0.64	+1.2
1,307,835	-		GFF4377	0.64	-0.2
1,307,851	+		GFF4377	0.66	-0.2
1,307,851	+		GFF4377	0.66	-0.3
1,307,852	-		GFF4377	0.66	-0.2
1,307,903	-		GFF4377	0.71	+0.4
1,307,950	+		GFF4377	0.76	+0.2
1,307,992	+		GFF4377	0.80	+0.2
1,307,992	+		GFF4377	0.80	-0.3
1,307,992	+		GFF4377	0.80	+0.1
1,307,993	-		GFF4377	0.80	-0.2
1,307,993	-		GFF4377	0.80	+0.1
1,308,038	-		GFF4377	0.84	-0.0
1,308,208	-				+0.3
1,308,208	-				+0.3
1,308,208	-				+0.2
1,308,208	-				-0.9
1,308,213	+				-0.8
1,308,214	-				-0.2
1,308,214	-				+0.2
1,308,228	+				-1.1
1,308,235	-				-0.3
1,308,235	-				-0.4
1,308,259	-				+0.3
1,308,259	-				+0.0
1,308,292	-				+1.0
1,308,326	+				-0.1
1,308,364	+				+0.3
1,308,395	-				+1.3
1,308,407	+				+1.0
1,308,408	-				-0.5
1,308,409	+				+0.1
1,308,409	+				-0.0
1,308,409	+				+0.3
1,308,409	+				+0.5
1,308,410	-				+0.1
1,308,410	-				+0.4
1,308,410	-				+0.1
1,308,410	-				+0.2
1,308,434	+				-1.1
1,308,522	-				-0.5
1,308,522	-				-0.3
1,308,872	+		GFF4378	0.37	+0.9
1,308,873	-		GFF4378	0.37	+1.2
1,308,873	-		GFF4378	0.37	+0.2
1,308,873	-		GFF4378	0.37	+0.1
1,308,873	-		GFF4378	0.37	+0.1
1,308,873	-		GFF4378	0.37	+0.6
1,308,873	-		GFF4378	0.37	-0.1
1,309,023	-		GFF4378	0.50	+0.2
1,309,023	-		GFF4378	0.50	+1.4
1,309,060	-		GFF4378	0.53	-0.6
1,309,469	+		GFF4378	0.88	+0.0
1,309,470	-		GFF4378	0.88	-0.5
1,309,484	+		GFF4378	0.89	+0.3
1,309,485	-		GFF4378	0.89	-0.3
1,309,556	+				-0.2
1,309,557	-				+0.5
1,309,557	-				+0.1
1,309,557	-				+0.9
1,309,557	-				-0.1
1,309,618	+				+0.1
1,309,619	-				+0.4
1,309,619	-				-0.0
1,309,619	-				+0.1
1,309,619	-				-0.0
1,309,662	-				+0.9
1,309,784	+		GFF4379	0.39	+0.3
1,309,785	-		GFF4379	0.39	+1.3
1,309,794	-		GFF4379	0.43	-0.4
1,309,828	+		GFF4379	0.55	-0.1
1,309,829	-		GFF4379	0.55	-0.0
1,310,162	-		GFF4380	0.39	-0.3
1,310,361	+		GFF4380	0.77	-0.9
1,310,361	+		GFF4380	0.77	-0.1
1,310,361	+		GFF4380	0.77	+1.4
1,310,361	+		GFF4380	0.77	-0.1
1,310,362	-		GFF4380	0.77	+0.3
1,310,363	+		GFF4380	0.78	+0.1
1,310,364	-		GFF4380	0.78	-0.2
1,310,364	-		GFF4380	0.78	+0.3
1,310,364	-		GFF4380	0.78	+0.4
1,310,437	+				+0.0
1,310,537	+		GFF4381	0.11	+0.2
1,310,538	-		GFF4381	0.11	-0.3