Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4282

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,207,796	+		GFF4281	0.49	+0.1
1,207,967	+		GFF4281	0.61	+0.4
1,207,967	+		GFF4281	0.61	+1.1
1,207,967	+		GFF4281	0.61	+0.4
1,207,967	+		GFF4281	0.61	+0.1
1,207,967	+		GFF4281	0.61	-1.2
1,207,967	+		GFF4281	0.61	+0.4
1,207,967	+		GFF4281	0.61	-0.1
1,207,968	-		GFF4281	0.61	+0.3
1,207,968	-		GFF4281	0.61	+0.7
1,207,968	-		GFF4281	0.61	+0.0
1,207,968	-		GFF4281	0.61	+0.9
1,207,968	-		GFF4281	0.61	+0.7
1,207,968	-		GFF4281	0.61	+0.3
1,208,210	+		GFF4281	0.76	-0.1
1,208,210	+		GFF4281	0.76	+1.3
1,208,211	-		GFF4281	0.76	-2.0
1,208,384	+		GFF4281	0.88	-0.0
1,208,384	+		GFF4281	0.88	-1.9
1,208,385	-		GFF4281	0.88	+0.2
1,208,385	-		GFF4281	0.88	-0.6
1,208,516	+				+0.4
1,208,516	+				+0.2
1,208,516	+				-0.3
1,208,517	-				-0.6
1,208,574	-				+0.6
1,208,639	+				+0.1
1,208,640	-				-0.1
1,208,651	+				+0.0
1,208,686	+				-0.3
1,208,687	-				-0.8
1,208,713	+				-0.1
1,208,714	-				+0.3
1,208,714	-				-0.3
1,208,714	-				+0.9
1,208,714	-				+1.1
1,208,714	-				-0.0
1,208,752	+				+0.9
1,208,752	+				+0.1
1,208,752	+				+0.5
1,208,752	+				-0.3
1,208,752	+				+0.3
1,208,752	+				-0.0
1,208,752	+				-0.3
1,208,752	+				-1.0
1,208,752	+				-0.0
1,208,752	+				+0.6
1,208,752	+				-0.1
1,208,753	-				-0.8
1,208,753	-				+1.0
1,208,753	-				+1.2
1,208,753	-				+0.1
1,208,937	+		GFF4282	0.16	-1.4
1,208,937	+		GFF4282	0.16	+0.2
1,208,937	+		GFF4282	0.16	+0.5
1,208,937	+		GFF4282	0.16	+0.1
1,208,937	+		GFF4282	0.16	+1.3
1,208,938	-		GFF4282	0.16	+0.3
1,208,938	-		GFF4282	0.16	+0.2
1,208,938	-		GFF4282	0.16	+0.4
1,208,938	-		GFF4282	0.16	+0.0
1,209,458	+		GFF4282	0.60	+0.1
1,209,458	+		GFF4282	0.60	-0.0
1,209,459	-		GFF4282	0.60	+0.9
1,209,533	+		GFF4282	0.67	+0.4
1,209,533	+		GFF4282	0.67	-0.3
1,209,533	+		GFF4282	0.67	+0.3
1,209,533	+		GFF4282	0.67	+0.5
1,209,533	+		GFF4282	0.67	+0.3
1,209,534	-		GFF4282	0.67	+0.5
1,209,608	+		GFF4282	0.73	+0.4
1,209,609	-		GFF4282	0.73	+0.3
1,209,609	-		GFF4282	0.73	-0.3
1,209,650	+		GFF4282	0.77	-0.6
1,209,650	+		GFF4282	0.77	-0.0
1,209,650	+		GFF4282	0.77	+1.0
1,209,650	+		GFF4282	0.77	-0.7
1,209,650	+		GFF4282	0.77	+0.6
1,209,650	+		GFF4282	0.77	-1.3
1,209,650	+		GFF4282	0.77	+0.2
1,209,650	+		GFF4282	0.77	+0.3
1,209,651	-		GFF4282	0.77	+0.0
1,209,651	-		GFF4282	0.77	-0.2
1,209,683	+		GFF4282	0.79	-0.8
1,209,683	+		GFF4282	0.79	-0.4
1,209,683	+		GFF4282	0.79	+0.5
1,209,683	+		GFF4282	0.79	+0.2
1,209,684	-		GFF4282	0.80	-0.3
1,209,684	-		GFF4282	0.80	+0.4
1,209,746	+		GFF4282	0.85	+0.2
1,209,746	+		GFF4282	0.85	-0.5
1,209,746	+		GFF4282	0.85	+0.0
1,209,746	+		GFF4282	0.85	-0.5
1,209,746	+		GFF4282	0.85	+0.3
1,209,746	+		GFF4282	0.85	+0.2
1,209,747	-		GFF4282	0.85	+0.4
1,209,747	-		GFF4282	0.85	+0.2
1,209,747	-		GFF4282	0.85	+0.2
1,209,747	-		GFF4282	0.85	+0.3
1,209,747	-		GFF4282	0.85	-0.6
1,209,747	-		GFF4282	0.85	+0.5
1,209,747	-		GFF4282	0.85	+0.6
1,209,747	-		GFF4282	0.85	+1.1
1,210,142	+		GFF4283	0.21	-1.1
1,210,142	+		GFF4283	0.21	+0.4
1,210,142	+		GFF4283	0.21	-0.2
1,210,142	+		GFF4283	0.21	+0.0
1,210,143	-		GFF4283	0.21	+0.0
1,210,143	-		GFF4283	0.21	-0.2
1,210,143	-		GFF4283	0.21	+0.0
1,210,295	+		GFF4283	0.41	-0.2
1,210,295	+		GFF4283	0.41	+0.1
1,210,295	+		GFF4283	0.41	-0.0
1,210,295	+		GFF4283	0.41	+1.1
1,210,296	-		GFF4283	0.41	+0.5
1,210,296	-		GFF4283	0.41	-0.2
1,210,296	-		GFF4283	0.41	+0.2
1,210,296	-		GFF4283	0.41	-0.5
1,210,412	+		GFF4283	0.57	-0.8
1,210,427	+		GFF4283	0.59	+0.6
1,210,427	+		GFF4283	0.59	-0.1
1,210,427	+		GFF4283	0.59	+0.1
1,210,427	+		GFF4283	0.59	+0.2
1,210,427	+		GFF4283	0.59	+0.1
1,210,428	-		GFF4283	0.59	-0.9
1,210,428	-		GFF4283	0.59	-0.3
1,210,428	-		GFF4283	0.59	+0.1
1,210,428	-		GFF4283	0.59	-2.5
1,210,428	-		GFF4283	0.59	+0.1
1,210,428	-		GFF4283	0.59	-0.4
1,210,428	-		GFF4283	0.59	-0.3
1,210,428	-		GFF4283	0.59	+1.2
1,210,428	-		GFF4283	0.59	-0.5
1,210,428	-		GFF4283	0.59	-0.4
1,210,577	+		GFF4283	0.79	-0.5
1,210,815	+				-0.8
1,210,815	+				-1.2