Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4261

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,184,103	+		GFF4260	0.51	-0.2
1,184,103	+		GFF4260	0.51	-0.4
1,184,103	+		GFF4260	0.51	-0.0
1,184,103	+		GFF4260	0.51	+0.0
1,184,103	+		GFF4260	0.51	+0.4
1,184,104	-		GFF4260	0.51	+1.0
1,184,104	-		GFF4260	0.51	+0.3
1,184,104	-		GFF4260	0.51	-0.6
1,184,445	+		GFF4260	0.81	-0.1
1,184,445	+		GFF4260	0.81	-0.0
1,184,445	+		GFF4260	0.81	-0.1
1,184,446	-		GFF4260	0.81	-0.5
1,184,451	+		GFF4260	0.82	+0.8
1,184,451	+		GFF4260	0.82	+0.1
1,184,452	-		GFF4260	0.82	+0.3
1,184,452	-		GFF4260	0.82	+0.1
1,184,452	-		GFF4260	0.82	-0.3
1,185,210	+		GFF4261	0.17	-0.6
1,185,210	+		GFF4261	0.17	-1.9
1,185,681	+		GFF4261	0.32	+0.9
1,185,682	-		GFF4261	0.32	+0.6
1,185,909	+		GFF4261	0.40	+0.0
1,185,910	-		GFF4261	0.40	+1.3
1,186,014	+		GFF4261	0.43	-0.6
1,186,014	+		GFF4261	0.43	+0.4
1,186,015	-		GFF4261	0.43	+0.0
1,186,395	+		GFF4261	0.55	-0.3
1,186,396	-		GFF4261	0.56	-0.0
1,186,396	-		GFF4261	0.56	+1.1
1,186,407	+		GFF4261	0.56	+0.6
1,186,407	+		GFF4261	0.56	+0.3
1,186,407	+		GFF4261	0.56	-0.1
1,186,408	-		GFF4261	0.56	+0.2
1,186,656	+		GFF4261	0.64	+0.4
1,186,656	+		GFF4261	0.64	-0.2
1,186,656	+		GFF4261	0.64	-1.1
1,186,657	-		GFF4261	0.64	+0.7
1,186,657	-		GFF4261	0.64	-0.3
1,186,657	-		GFF4261	0.64	+1.6
1,186,657	-		GFF4261	0.64	-0.8
1,186,657	-		GFF4261	0.64	-0.2
1,186,680	+		GFF4261	0.65	+1.3
1,186,680	+		GFF4261	0.65	-0.1
1,186,680	+		GFF4261	0.65	+0.2
1,186,680	+		GFF4261	0.65	+2.0
1,186,681	-		GFF4261	0.65	+0.4
1,186,681	-		GFF4261	0.65	+0.3
1,186,908	+		GFF4261	0.72	-0.6
1,186,908	+		GFF4261	0.72	-0.6
1,186,909	-		GFF4261	0.72	-0.1
1,186,909	-		GFF4261	0.72	+0.9
1,186,909	-		GFF4261	0.72	+0.3
1,187,169	+		GFF4261	0.81	+0.8
1,187,170	-		GFF4261	0.81	+0.3
1,187,259	+		GFF4261	0.83	+0.2
1,187,259	+		GFF4261	0.83	-0.0
1,187,260	-		GFF4261	0.84	-0.7
1,187,260	-		GFF4261	0.84	+0.5
1,187,260	-		GFF4261	0.84	-0.4
1,187,260	-		GFF4261	0.84	+0.4
1,187,679	+				-0.1
1,187,679	+				+0.7
1,187,679	+				-0.6
1,187,679	+				+0.1
1,187,679	+				+0.9
1,187,679	+				+0.1
1,187,679	+				-0.6
1,187,679	+				+0.1
1,187,679	+				-0.5
1,187,680	-				+0.8
1,187,680	-				+0.7
1,187,680	-				-0.4
1,187,680	-				+0.6
1,187,680	-				-0.6
1,187,680	-				-0.2
1,187,680	-				-0.4
1,187,680	-				-0.3
1,187,680	-				+0.7
1,187,680	-				-0.4
1,187,960	-		GFF4262	0.14	+1.3
1,188,391	+		GFF4262	0.48	-1.5
1,188,391	+		GFF4262	0.48	+0.1
1,188,406	+		GFF4262	0.49	+0.8
1,188,406	+		GFF4262	0.49	-0.8
1,188,407	-		GFF4262	0.49	-0.3
1,188,407	-		GFF4262	0.49	+0.4
1,188,407	-		GFF4262	0.49	-0.6
1,188,466	+		GFF4262	0.54	+0.4
1,188,466	+		GFF4262	0.54	+0.4
1,188,466	+		GFF4262	0.54	+0.2
1,188,467	-		GFF4262	0.54	-0.5
1,188,467	-		GFF4262	0.54	-0.5