Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4150

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,060,794	+				+0.2
1,060,794	+				-1.1
1,060,795	-				-1.0
1,060,849	-				-1.0
1,060,849	-				+0.6
1,060,849	-				+0.2
1,060,951	+				+0.3
1,060,951	+				-0.7
1,060,951	+				-0.6
1,060,952	-				-0.4
1,060,952	-				-0.6
1,061,049	+				+0.0
1,061,049	+				+0.1
1,061,049	+				+0.5
1,061,050	-				-0.4
1,061,177	-				+0.2
1,061,239	+				+0.2
1,061,247	+				-0.5
1,061,247	+				-0.9
1,061,247	+				+0.2
1,061,247	+				-0.0
1,061,247	+				+0.5
1,061,248	-				+0.6
1,061,248	-				+0.5
1,061,248	-				-0.2
1,061,264	-				+0.2
1,061,304	-		GFF4149	0.16	-0.2
1,061,330	+		GFF4149	0.27	-0.4
1,061,611	+				+0.1
1,061,612	-				+0.8
1,061,631	-				+0.1
1,061,641	+				-0.2
1,061,642	-				-1.4
1,061,656	+				+1.2
1,061,656	+				+0.6
1,061,656	+				-0.8
1,061,656	+				-0.2
1,061,656	+				-0.1
1,061,657	-				-2.1
1,061,657	-				+0.3
1,061,706	-				+0.5
1,061,776	+				-0.0
1,061,776	+				-0.1
1,061,776	+				+0.6
1,061,777	-				+0.2
1,061,777	-				+0.1
1,061,812	+				+0.1
1,061,812	+				+0.4
1,061,812	+				+1.9
1,061,813	-				-1.0
1,061,813	-				+0.1
1,061,813	-				+0.1
1,061,819	+				-0.1
1,061,849	+				+0.4
1,061,849	+				-0.2
1,062,075	+		GFF4150	0.28	+0.7
1,062,076	-		GFF4150	0.28	-0.1
1,062,076	-		GFF4150	0.28	-0.5
1,062,076	-		GFF4150	0.28	-0.2
1,062,216	+		GFF4150	0.39	-0.4
1,062,216	+		GFF4150	0.39	-0.4
1,062,216	+		GFF4150	0.39	+0.8
1,062,216	+		GFF4150	0.39	+0.3
1,062,216	+		GFF4150	0.39	-0.6
1,062,216	+		GFF4150	0.39	-0.2
1,062,216	+		GFF4150	0.39	+0.2
1,062,217	-		GFF4150	0.39	-0.8
1,062,217	-		GFF4150	0.39	+0.5
1,062,217	-		GFF4150	0.39	+0.7
1,062,217	-		GFF4150	0.39	+0.4
1,062,217	-		GFF4150	0.39	+0.2
1,062,217	-		GFF4150	0.39	+0.2
1,062,217	-		GFF4150	0.39	+0.2
1,062,330	+		GFF4150	0.49	-0.1
1,062,331	-		GFF4150	0.49	+0.7
1,062,331	-		GFF4150	0.49	+0.3
1,062,426	+		GFF4150	0.57	-0.5
1,062,426	+		GFF4150	0.57	+0.4
1,062,426	+		GFF4150	0.57	+0.0
1,062,426	+		GFF4150	0.57	-0.9
1,062,426	+		GFF4150	0.57	+0.0
1,062,426	+		GFF4150	0.57	-0.3
1,062,426	+		GFF4150	0.57	+0.3
1,062,426	+		GFF4150	0.57	-0.1
1,062,426	+		GFF4150	0.57	-0.4
1,062,426	+		GFF4150	0.57	+1.3
1,062,426	+		GFF4150	0.57	+1.7
1,062,426	+		GFF4150	0.57	+0.8
1,062,426	+		GFF4150	0.57	-0.4
1,062,426	+		GFF4150	0.57	+0.0
1,062,426	+		GFF4150	0.57	+0.2
1,062,426	+		GFF4150	0.57	-0.4
1,062,426	+		GFF4150	0.57	-0.6
1,062,426	+		GFF4150	0.57	+0.6
1,062,426	-		GFF4150	0.57	-0.3
1,062,427	-		GFF4150	0.57	-0.2
1,062,427	-		GFF4150	0.57	-0.4
1,062,427	-		GFF4150	0.57	-1.0
1,062,427	-		GFF4150	0.57	-0.3
1,062,427	-		GFF4150	0.57	+0.1
1,062,427	-		GFF4150	0.57	-0.0
1,062,427	-		GFF4150	0.57	+0.6
1,062,427	-		GFF4150	0.57	+0.4
1,062,427	-		GFF4150	0.57	+0.1
1,062,427	-		GFF4150	0.57	-0.3
1,062,427	-		GFF4150	0.57	-0.0
1,062,427	-		GFF4150	0.57	-1.4
1,062,427	-		GFF4150	0.57	-0.9
1,062,427	-		GFF4150	0.57	-0.5
1,062,585	+		GFF4150	0.70	+0.1
1,062,585	+		GFF4150	0.70	+0.4
1,062,586	-		GFF4150	0.70	+0.6
1,062,627	+		GFF4150	0.73	-0.0
1,062,628	-		GFF4150	0.74	-0.2
1,062,681	+		GFF4150	0.78	+0.2
1,062,681	+		GFF4150	0.78	-1.2
1,062,681	+		GFF4150	0.78	+0.3
1,062,681	+		GFF4150	0.78	-1.6
1,062,682	-		GFF4150	0.78	-0.0
1,062,793	+		GFF4150	0.87	-0.2
1,062,793	+		GFF4150	0.87	+0.2
1,062,793	+		GFF4150	0.87	+0.1
1,062,793	+		GFF4150	0.87	-0.7
1,062,793	+		GFF4150	0.87	+0.1
1,062,794	-		GFF4150	0.87	-0.5
1,062,794	-		GFF4150	0.87	-0.8
1,062,794	-		GFF4150	0.87	+0.0
1,062,794	-		GFF4150	0.87	-0.4
1,062,794	-		GFF4150	0.87	-0.2
1,062,840	+				+0.3
1,062,840	+				+0.0
1,062,840	+				+0.2
1,062,840	+				-0.0
1,062,840	+				+0.0
1,062,840	+				-0.2
1,062,840	+				+0.1
1,062,840	+				-0.4
1,062,840	+				+0.2
1,062,841	-				-0.0
1,062,841	-				+0.8
1,062,841	-				-0.2
1,062,841	-				-0.2
1,062,841	-				+0.1
1,062,841	-				+0.4
1,062,993	-				-0.2
1,062,993	-				-0.1
1,062,993	-				-0.2
1,063,079	+				-0.1
1,063,079	+				+0.1
1,063,079	+				+0.8
1,063,080	-				+0.4
1,063,080	-				+0.9
1,063,080	-				-0.6
1,063,080	-				-0.5
1,063,080	-				+0.0
1,063,190	+				+0.1
1,063,190	+				-0.1
1,063,190	+				+0.2
1,063,190	+				-0.4
1,063,190	+				+0.6
1,063,191	-				-0.6
1,063,191	-				+0.3
1,063,191	-				-0.3
1,063,191	-				+0.4
1,063,191	-				-0.3
1,063,191	-				-0.4
1,063,191	-				-0.0
1,063,194	+				+1.3
1,063,194	+				-0.1
1,063,194	+				+0.4
1,063,194	+				+0.6
1,063,194	+				-0.2
1,063,194	+				-0.2
1,063,194	+				+0.1
1,063,194	+				+0.2
1,063,194	+				+0.2
1,063,194	+				-0.5
1,063,194	+				-0.3
1,063,194	+				-0.2
1,063,194	+				-0.1
1,063,195	-				+0.1
1,063,195	-				+0.2
1,063,195	-				-0.1
1,063,195	-				-0.3
1,063,195	-				+0.2
1,063,195	-				-0.9
1,063,195	-				+0.2
1,063,195	-				-1.5
1,063,195	-				+0.4
1,063,195	-				+0.6
1,063,195	-				+0.2
1,063,195	-				+0.3
1,063,201	+				-0.1
1,063,201	+				+0.6
1,063,201	+				-0.1
1,063,202	-				+0.8
1,063,202	-				-0.3
1,063,202	-				+1.9
1,063,202	-				+0.2
1,063,202	-				-0.1
1,063,202	-				-2.7
1,063,386	+		GFF4151	0.34	-1.2
1,063,386	+		GFF4151	0.34	+0.2
1,063,386	+		GFF4151	0.34	+0.4
1,063,386	+		GFF4151	0.34	+0.5
1,063,386	+		GFF4151	0.34	-0.1
1,063,387	-		GFF4151	0.35	+0.7
1,063,387	-		GFF4151	0.35	-0.0
1,063,387	-		GFF4151	0.35	-0.4
1,063,418	+		GFF4151	0.43	-0.2
1,063,418	+		GFF4151	0.43	-0.5
1,063,419	-		GFF4151	0.43	-0.7
1,063,444	+		GFF4151	0.49	-0.2
1,063,467	+		GFF4151	0.55	-0.4
1,063,467	+		GFF4151	0.55	+0.0
1,063,468	-		GFF4151	0.56	+0.3
1,063,468	-		GFF4151	0.56	-0.2
1,063,468	-		GFF4151	0.56	+0.5
1,063,606	+				+0.2
1,063,606	+				+0.6
1,063,606	+				-0.0
1,063,755	+		GFF4152	0.44	+0.5
1,063,755	+		GFF4152	0.44	+1.8
1,063,755	+		GFF4152	0.44	+0.3
1,063,756	-		GFF4152	0.45	-0.3