Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4004 and GFF4005 are separated by 83 nucleotides GFF4005 and GFF4006 are separated by 38 nucleotides GFF4006 and GFF4007 are separated by 231 nucleotides GFF4007 and GFF4008 overlap by 38 nucleotides
GFF4004 - LysR family regulatory protein, at 919,394 to 920,338
GFF4004
GFF4005 - hypothetical protein, at 920,422 to 920,727
GFF4005
GFF4006 - Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 920,766 to 922,010
GFF4006
GFF4007 - RecA/RadA recombinase, at 922,242 to 922,967
GFF4007
GFF4008 - DNA polymerase-like protein PA0670, at 922,930 to 924,219
GFF4008
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -1
0
1
2 at 920.612 kb on - strand, within GFF4005 at 920.612 kb on - strand, within GFF4005 at 921.024 kb on + strand, within GFF4006 at 921.025 kb on - strand, within GFF4006 at 921.025 kb on - strand, within GFF4006 at 921.219 kb on + strand, within GFF4006 at 921.315 kb on + strand, within GFF4006 at 921.316 kb on - strand, within GFF4006 at 921.441 kb on + strand, within GFF4006 at 921.441 kb on + strand, within GFF4006 at 921.442 kb on - strand, within GFF4006 at 921.663 kb on + strand, within GFF4006 at 921.663 kb on + strand, within GFF4006 at 921.664 kb on - strand, within GFF4006 at 921.664 kb on - strand, within GFF4006 at 921.670 kb on - strand, within GFF4006 at 921.714 kb on + strand, within GFF4006 at 921.715 kb on - strand, within GFF4006 at 922.086 kb on + strand at 922.087 kb on - strand at 922.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 920,612 - GFF4005 0.62 +0.2 920,612 - GFF4005 0.62 -0.4 921,024 + GFF4006 0.21 -0.4 921,025 - GFF4006 0.21 -0.3 921,025 - GFF4006 0.21 -1.3 921,219 + GFF4006 0.36 -0.1 921,315 + GFF4006 0.44 -0.6 921,316 - GFF4006 0.44 +1.2 921,441 + GFF4006 0.54 -0.7 921,441 + GFF4006 0.54 +0.8 921,442 - GFF4006 0.54 -0.6 921,663 + GFF4006 0.72 -0.6 921,663 + GFF4006 0.72 -0.5 921,664 - GFF4006 0.72 -0.1 921,664 - GFF4006 0.72 -0.2 921,670 - GFF4006 0.73 +1.8 921,714 + GFF4006 0.76 +0.6 921,715 - GFF4006 0.76 -0.9 922,086 + +0.3 922,087 - +0.2 922,100 - -0.3
Or see this region's nucleotide sequence