Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3963 and GFF3964 are separated by 79 nucleotides GFF3964 and GFF3965 are separated by 155 nucleotides GFF3965 and GFF3966 are separated by 86 nucleotides GFF3966 and GFF3967 are separated by 110 nucleotides
GFF3963 - Tricarboxylate transport protein TctC, at 878,126 to 879,133
GFF3963
GFF3964 - Transcriptional regulator, TetR family, at 879,213 to 879,743
GFF3964
GFF3965 - Acetolactate synthase large subunit (EC 2.2.1.6), at 879,899 to 881,602
GFF3965
GFF3966 - Transcriptional regulator, LuxR family precursor, at 881,689 to 882,384
GFF3966
GFF3967 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 882,495 to 883,049
GFF3967
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -1
0
1
2 at 879.175 kb on - strand at 879.229 kb on + strand at 879.230 kb on - strand at 879.235 kb on - strand at 879.334 kb on + strand, within GFF3964 at 879.334 kb on + strand, within GFF3964 at 879.334 kb on + strand, within GFF3964 at 879.334 kb on + strand, within GFF3964 at 879.340 kb on + strand, within GFF3964 at 879.340 kb on + strand, within GFF3964 at 879.364 kb on + strand, within GFF3964 at 879.364 kb on + strand, within GFF3964 at 879.364 kb on + strand, within GFF3964 at 879.365 kb on - strand, within GFF3964 at 879.547 kb on + strand, within GFF3964 at 879.550 kb on + strand, within GFF3964 at 879.550 kb on + strand, within GFF3964 at 879.551 kb on - strand, within GFF3964 at 879.551 kb on - strand, within GFF3964 at 879.551 kb on - strand, within GFF3964 at 879.551 kb on - strand, within GFF3964 at 879.644 kb on - strand, within GFF3964 at 879.644 kb on - strand, within GFF3964 at 879.644 kb on - strand, within GFF3964 at 879.691 kb on + strand at 879.691 kb on + strand at 879.691 kb on + strand at 879.691 kb on - strand at 879.692 kb on - strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.697 kb on + strand at 879.801 kb on - strand at 879.801 kb on - strand at 879.801 kb on - strand at 879.863 kb on + strand at 879.983 kb on + strand at 879.984 kb on - strand at 879.984 kb on - strand at 880.250 kb on + strand, within GFF3965 at 880.250 kb on + strand, within GFF3965 at 880.331 kb on + strand, within GFF3965 at 880.331 kb on + strand, within GFF3965 at 880.332 kb on - strand, within GFF3965 at 880.652 kb on + strand, within GFF3965 at 880.653 kb on - strand, within GFF3965 at 880.653 kb on - strand, within GFF3965 at 880.763 kb on + strand, within GFF3965 at 880.764 kb on - strand, within GFF3965 at 881.367 kb on - strand, within GFF3965 at 881.436 kb on - strand at 881.604 kb on + strand at 881.604 kb on + strand at 881.605 kb on - strand at 881.605 kb on - strand at 881.644 kb on + strand at 881.657 kb on + strand at 881.804 kb on - strand, within GFF3966 at 882.370 kb on + strand at 882.371 kb on - strand at 882.531 kb on + strand at 882.531 kb on + strand at 882.531 kb on + strand at 882.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 879,175 - +0.4 879,229 + -0.4 879,230 - -1.6 879,235 - +0.9 879,334 + GFF3964 0.23 -0.8 879,334 + GFF3964 0.23 -0.1 879,334 + GFF3964 0.23 +0.8 879,334 + GFF3964 0.23 +1.1 879,340 + GFF3964 0.24 -0.1 879,340 + GFF3964 0.24 +0.0 879,364 + GFF3964 0.28 +0.2 879,364 + GFF3964 0.28 -1.2 879,364 + GFF3964 0.28 -0.4 879,365 - GFF3964 0.29 -0.8 879,547 + GFF3964 0.63 -0.5 879,550 + GFF3964 0.63 -0.1 879,550 + GFF3964 0.63 +0.3 879,551 - GFF3964 0.64 +0.1 879,551 - GFF3964 0.64 +0.2 879,551 - GFF3964 0.64 +0.2 879,551 - GFF3964 0.64 -1.5 879,644 - GFF3964 0.81 -0.1 879,644 - GFF3964 0.81 +0.7 879,644 - GFF3964 0.81 +0.6 879,691 + -0.1 879,691 + +0.4 879,691 + -1.1 879,691 - +0.1 879,692 - +0.1 879,697 + -0.8 879,697 + -0.7 879,697 + +0.9 879,697 + +0.5 879,697 + -0.9 879,697 + -0.3 879,697 + -0.0 879,697 + -0.2 879,697 + -0.3 879,697 + -0.2 879,801 - +0.2 879,801 - -0.4 879,801 - -1.0 879,863 + +0.1 879,983 + -0.9 879,984 - -0.7 879,984 - -0.2 880,250 + GFF3965 0.21 -0.3 880,250 + GFF3965 0.21 -0.8 880,331 + GFF3965 0.25 -0.8 880,331 + GFF3965 0.25 -0.0 880,332 - GFF3965 0.25 +1.9 880,652 + GFF3965 0.44 +0.7 880,653 - GFF3965 0.44 +0.2 880,653 - GFF3965 0.44 +0.2 880,763 + GFF3965 0.51 +0.8 880,764 - GFF3965 0.51 +1.5 881,367 - GFF3965 0.86 +0.6 881,436 - -0.3 881,604 + +0.2 881,604 + +0.4 881,605 - +0.5 881,605 - +0.8 881,644 + -0.1 881,657 + -0.5 881,804 - GFF3966 0.17 -1.3 882,370 + -0.6 882,371 - +0.1 882,531 + +1.1 882,531 + -0.1 882,531 + +0.3 882,532 - -0.3
Or see this region's nucleotide sequence