Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3903 and GFF3904 are separated by 159 nucleotides GFF3904 and GFF3905 are separated by 22 nucleotides GFF3905 and GFF3906 are separated by 17 nucleotides GFF3906 and GFF3907 are separated by 30 nucleotides
GFF3903 - RND efflux system, outer membrane lipoprotein CmeC, at 815,157 to 816,566
GFF3903
GFF3904 - FIG019175: putative membrane protein, at 816,726 to 817,364
GFF3904
GFF3905 - FIG019993: putative exported protein, at 817,387 to 817,899
GFF3905
GFF3906 - Nikel transport family protein NikM, at 817,917 to 818,849
GFF3906
GFF3907 - Thiamin biosynthesis lipoprotein ApbE, at 818,880 to 819,944
GFF3907
Position (kb) 817
818 Strain fitness (log2 ratio) -2
-1
0
1 at 816.516 kb on + strand at 816.516 kb on + strand at 816.516 kb on + strand at 816.517 kb on - strand at 816.517 kb on - strand at 816.517 kb on - strand at 816.720 kb on - strand at 816.768 kb on + strand at 816.768 kb on + strand at 816.769 kb on - strand at 817.062 kb on + strand, within GFF3904 at 817.062 kb on + strand, within GFF3904 at 817.062 kb on + strand, within GFF3904 at 817.131 kb on + strand, within GFF3904 at 817.131 kb on + strand, within GFF3904 at 817.161 kb on + strand, within GFF3904 at 817.495 kb on + strand, within GFF3905 at 817.495 kb on + strand, within GFF3905 at 817.496 kb on - strand, within GFF3905 at 817.496 kb on - strand, within GFF3905 at 817.567 kb on + strand, within GFF3905 at 817.568 kb on - strand, within GFF3905 at 817.568 kb on - strand, within GFF3905 at 817.754 kb on - strand, within GFF3905 at 817.754 kb on - strand, within GFF3905 at 818.032 kb on - strand, within GFF3906 at 818.032 kb on - strand, within GFF3906 at 818.088 kb on + strand, within GFF3906 at 818.088 kb on + strand, within GFF3906 at 818.088 kb on + strand, within GFF3906 at 818.089 kb on - strand, within GFF3906 at 818.091 kb on + strand, within GFF3906 at 818.092 kb on - strand, within GFF3906 at 818.223 kb on + strand, within GFF3906 at 818.224 kb on - strand, within GFF3906 at 818.224 kb on - strand, within GFF3906 at 818.224 kb on - strand, within GFF3906 at 818.640 kb on + strand, within GFF3906 at 818.641 kb on - strand, within GFF3906 at 818.641 kb on - strand, within GFF3906
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 816,516 + -0.9 816,516 + -0.2 816,516 + -0.4 816,517 - +0.0 816,517 - +1.1 816,517 - -1.0 816,720 - -0.1 816,768 + -0.5 816,768 + -0.5 816,769 - +0.1 817,062 + GFF3904 0.53 -0.0 817,062 + GFF3904 0.53 -0.1 817,062 + GFF3904 0.53 -0.4 817,131 + GFF3904 0.63 -0.6 817,131 + GFF3904 0.63 -1.3 817,161 + GFF3904 0.68 -0.2 817,495 + GFF3905 0.21 +1.7 817,495 + GFF3905 0.21 -0.2 817,496 - GFF3905 0.21 -0.1 817,496 - GFF3905 0.21 -1.1 817,567 + GFF3905 0.35 -0.2 817,568 - GFF3905 0.35 +0.3 817,568 - GFF3905 0.35 -0.2 817,754 - GFF3905 0.72 -0.2 817,754 - GFF3905 0.72 -1.3 818,032 - GFF3906 0.12 -0.3 818,032 - GFF3906 0.12 +0.8 818,088 + GFF3906 0.18 -0.0 818,088 + GFF3906 0.18 +0.1 818,088 + GFF3906 0.18 -0.3 818,089 - GFF3906 0.18 +0.1 818,091 + GFF3906 0.19 +1.5 818,092 - GFF3906 0.19 -1.9 818,223 + GFF3906 0.33 +0.6 818,224 - GFF3906 0.33 +0.9 818,224 - GFF3906 0.33 -1.3 818,224 - GFF3906 0.33 -0.4 818,640 + GFF3906 0.77 +0.7 818,641 - GFF3906 0.78 +0.6 818,641 - GFF3906 0.78 -0.5
Or see this region's nucleotide sequence