Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3892 and GFF3893 are separated by 8 nucleotides GFF3893 and GFF3894 are separated by 48 nucleotides GFF3894 and GFF3895 overlap by 4 nucleotides GFF3895 and GFF3896 overlap by 1 nucleotides
GFF3892 - FIG137877: Hypothetical protein in pyoverdin gene cluster, at 804,353 to 804,682
GFF3892
GFF3893 - FIG049111: Hypothetical protein in pyoverdin gene cluster, at 804,691 to 805,290
GFF3893
GFF3894 - Cation ABC transporter, periplasmic cation-binding protein, at 805,339 to 806,277
GFF3894
GFF3895 - ABC transporter in pyoverdin gene cluster, ATP-binding component, at 806,274 to 807,023
GFF3895
GFF3896 - ABC transporter in pyoverdin gene cluster, permease component, at 807,023 to 807,925
GFF3896
Position (kb) 805
806
807 Strain fitness (log2 ratio) -2
-1
0
1 at 804.539 kb on + strand, within GFF3892 at 805.045 kb on + strand, within GFF3893 at 805.045 kb on + strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.046 kb on - strand, within GFF3893 at 805.253 kb on - strand at 805.480 kb on + strand, within GFF3894 at 805.480 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.483 kb on + strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.484 kb on - strand, within GFF3894 at 805.489 kb on + strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.490 kb on - strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.561 kb on + strand, within GFF3894 at 805.855 kb on + strand, within GFF3894 at 805.855 kb on + strand, within GFF3894 at 805.855 kb on + strand, within GFF3894 at 805.972 kb on + strand, within GFF3894 at 805.978 kb on + strand, within GFF3894 at 806.131 kb on + strand, within GFF3894 at 806.131 kb on + strand, within GFF3894 at 806.132 kb on - strand, within GFF3894 at 806.132 kb on - strand, within GFF3894 at 806.170 kb on + strand, within GFF3894 at 806.171 kb on - strand, within GFF3894 at 806.200 kb on + strand at 806.201 kb on - strand at 806.201 kb on - strand at 806.509 kb on - strand, within GFF3895 at 806.509 kb on - strand, within GFF3895 at 807.037 kb on + strand at 807.037 kb on + strand at 807.037 kb on + strand at 807.260 kb on + strand, within GFF3896 at 807.260 kb on + strand, within GFF3896 at 807.261 kb on - strand, within GFF3896
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 804,539 + GFF3892 0.56 +0.0 805,045 + GFF3893 0.59 -0.5 805,045 + GFF3893 0.59 +0.4 805,046 - GFF3893 0.59 -0.4 805,046 - GFF3893 0.59 +0.6 805,046 - GFF3893 0.59 -0.1 805,046 - GFF3893 0.59 -0.5 805,046 - GFF3893 0.59 -0.7 805,253 - -0.6 805,480 + GFF3894 0.15 -0.6 805,480 + GFF3894 0.15 -0.1 805,483 + GFF3894 0.15 +0.7 805,483 + GFF3894 0.15 -0.0 805,483 + GFF3894 0.15 -0.9 805,483 + GFF3894 0.15 -0.2 805,483 + GFF3894 0.15 +1.2 805,483 + GFF3894 0.15 -0.3 805,483 + GFF3894 0.15 +0.0 805,484 - GFF3894 0.15 -0.6 805,484 - GFF3894 0.15 -0.2 805,484 - GFF3894 0.15 -0.2 805,484 - GFF3894 0.15 +0.2 805,484 - GFF3894 0.15 +0.3 805,484 - GFF3894 0.15 -0.2 805,489 + GFF3894 0.16 +0.1 805,490 - GFF3894 0.16 -1.2 805,490 - GFF3894 0.16 +1.5 805,490 - GFF3894 0.16 -0.2 805,490 - GFF3894 0.16 -0.7 805,490 - GFF3894 0.16 -0.2 805,490 - GFF3894 0.16 +0.1 805,490 - GFF3894 0.16 -0.2 805,490 - GFF3894 0.16 +1.3 805,490 - GFF3894 0.16 -1.1 805,561 + GFF3894 0.24 -0.8 805,561 + GFF3894 0.24 +0.3 805,561 + GFF3894 0.24 -0.1 805,561 + GFF3894 0.24 +0.4 805,561 + GFF3894 0.24 -0.5 805,855 + GFF3894 0.55 -2.6 805,855 + GFF3894 0.55 +0.4 805,855 + GFF3894 0.55 -0.0 805,972 + GFF3894 0.67 -0.1 805,978 + GFF3894 0.68 -0.3 806,131 + GFF3894 0.84 +0.9 806,131 + GFF3894 0.84 -0.4 806,132 - GFF3894 0.84 -1.5 806,132 - GFF3894 0.84 +0.3 806,170 + GFF3894 0.88 -0.2 806,171 - GFF3894 0.89 -1.0 806,200 + -0.3 806,201 - +0.4 806,201 - +0.1 806,509 - GFF3895 0.31 +1.1 806,509 - GFF3895 0.31 +0.6 807,037 + +0.0 807,037 + -0.1 807,037 + -0.1 807,260 + GFF3896 0.26 -0.1 807,260 + GFF3896 0.26 +1.0 807,261 - GFF3896 0.26 +0.0
Or see this region's nucleotide sequence