Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF389

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF387 and GFF388 overlap by 4 nucleotidesGFF388 and GFF389 are separated by 86 nucleotidesGFF389 and GFF390 are separated by 228 nucleotides GFF387 - TRAP-type C4-dicarboxylate transport system, large permease component, at 53,661 to 55,625 GFF387 GFF388 - TRAP-type C4-dicarboxylate transport system, small permease component, at 55,622 to 56,242 GFF388 GFF389 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 56,329 to 57,438 GFF389 GFF390 - Rhodanese-related sulfurtransferase, at 57,667 to 58,791 GFF390 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1at 55.369 kb on + strand, within GFF387at 55.369 kb on + strand, within GFF387at 55.370 kb on - strand, within GFF387at 55.417 kb on + strand, within GFF387at 55.417 kb on + strand, within GFF387at 55.833 kb on + strand, within GFF388at 55.833 kb on + strand, within GFF388at 55.834 kb on - strand, within GFF388at 55.834 kb on - strand, within GFF388at 55.834 kb on - strand, within GFF388at 55.846 kb on - strand, within GFF388at 55.846 kb on - strand, within GFF388at 55.846 kb on - strand, within GFF388at 55.905 kb on + strand, within GFF388at 55.905 kb on + strand, within GFF388at 55.905 kb on + strand, within GFF388at 55.905 kb on + strand, within GFF388at 55.906 kb on - strand, within GFF388at 55.906 kb on - strand, within GFF388at 55.959 kb on + strand, within GFF388at 55.959 kb on + strand, within GFF388at 55.959 kb on + strand, within GFF388at 55.960 kb on - strand, within GFF388at 55.960 kb on - strand, within GFF388at 55.960 kb on - strand, within GFF388at 56.007 kb on + strand, within GFF388at 56.008 kb on - strand, within GFF388at 56.050 kb on - strand, within GFF388at 56.079 kb on + strand, within GFF388at 56.079 kb on + strand, within GFF388at 56.080 kb on - strand, within GFF388at 56.080 kb on - strand, within GFF388at 56.131 kb on - strand, within GFF388at 56.348 kb on + strandat 56.348 kb on + strandat 56.349 kb on - strandat 56.349 kb on - strandat 56.349 kb on - strandat 56.381 kb on + strandat 56.528 kb on + strand, within GFF389at 56.562 kb on - strand, within GFF389at 56.981 kb on + strand, within GFF389at 56.981 kb on + strand, within GFF389at 56.981 kb on + strand, within GFF389at 56.982 kb on - strand, within GFF389at 56.982 kb on - strand, within GFF389at 56.982 kb on - strand, within GFF389at 56.982 kb on - strand, within GFF389at 56.982 kb on - strand, within GFF389at 57.011 kb on + strand, within GFF389at 57.012 kb on - strand, within GFF389at 57.012 kb on - strand, within GFF389at 57.012 kb on - strand, within GFF389at 57.044 kb on + strand, within GFF389at 57.044 kb on + strand, within GFF389at 57.044 kb on + strand, within GFF389at 57.044 kb on + strand, within GFF389at 57.045 kb on - strand, within GFF389at 57.045 kb on - strand, within GFF389at 57.129 kb on - strand, within GFF389at 57.129 kb on - strand, within GFF389at 57.284 kb on + strand, within GFF389at 57.285 kb on - strand, within GFF389at 57.285 kb on - strand, within GFF389at 57.587 kb on - strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.706 kb on + strandat 57.707 kb on - strandat 57.707 kb on - strandat 57.707 kb on - strandat 57.707 kb on - strandat 57.707 kb on - strandat 57.707 kb on - strandat 57.707 kb on - strandat 57.707 kb on - strandat 57.712 kb on + strandat 57.712 kb on + strandat 57.712 kb on + strandat 57.712 kb on + strandat 57.712 kb on + strandat 57.712 kb on + strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.713 kb on - strandat 57.802 kb on + strand, within GFF390at 57.802 kb on + strand, within GFF390at 58.183 kb on + strand, within GFF390at 58.184 kb on - strand, within GFF390at 58.230 kb on + strand, within GFF390at 58.230 kb on + strand, within GFF390at 58.230 kb on + strand, within GFF390at 58.231 kb on - strand, within GFF390at 58.231 kb on - strand, within GFF390at 58.231 kb on - strand, within GFF390at 58.411 kb on + strand, within GFF390at 58.411 kb on + strand, within GFF390at 58.411 kb on + strand, within GFF390at 58.412 kb on - strand, within GFF390at 58.412 kb on - strand, within GFF390

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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55,369 + GFF387 0.87 +0.2
55,369 + GFF387 0.87 +0.0
55,370 - GFF387 0.87 -0.3
55,417 + GFF387 0.89 -0.1
55,417 + GFF387 0.89 +0.3
55,833 + GFF388 0.34 +0.2
55,833 + GFF388 0.34 +0.6
55,834 - GFF388 0.34 +0.1
55,834 - GFF388 0.34 -0.1
55,834 - GFF388 0.34 +1.0
55,846 - GFF388 0.36 +0.3
55,846 - GFF388 0.36 +0.1
55,846 - GFF388 0.36 -0.2
55,905 + GFF388 0.46 +0.0
55,905 + GFF388 0.46 -0.8
55,905 + GFF388 0.46 -1.1
55,905 + GFF388 0.46 +0.5
55,906 - GFF388 0.46 -0.5
55,906 - GFF388 0.46 -1.9
55,959 + GFF388 0.54 +0.1
55,959 + GFF388 0.54 -0.2
55,959 + GFF388 0.54 +0.9
55,960 - GFF388 0.54 +0.0
55,960 - GFF388 0.54 -0.3
55,960 - GFF388 0.54 +0.2
56,007 + GFF388 0.62 +0.5
56,008 - GFF388 0.62 -0.2
56,050 - GFF388 0.69 +0.4
56,079 + GFF388 0.74 +0.6
56,079 + GFF388 0.74 -0.2
56,080 - GFF388 0.74 -0.7
56,080 - GFF388 0.74 -0.1
56,131 - GFF388 0.82 -0.3
56,348 + -0.1
56,348 + -0.1
56,349 - +0.3
56,349 - +0.3
56,349 - -0.2
56,381 + +0.2
56,528 + GFF389 0.18 -0.4
56,562 - GFF389 0.21 +1.0
56,981 + GFF389 0.59 -0.2
56,981 + GFF389 0.59 -0.6
56,981 + GFF389 0.59 -2.4
56,982 - GFF389 0.59 -0.2
56,982 - GFF389 0.59 -0.4
56,982 - GFF389 0.59 -0.7
56,982 - GFF389 0.59 -0.5
56,982 - GFF389 0.59 -1.2
57,011 + GFF389 0.61 +0.7
57,012 - GFF389 0.62 +0.5
57,012 - GFF389 0.62 -0.1
57,012 - GFF389 0.62 -1.1
57,044 + GFF389 0.64 +0.0
57,044 + GFF389 0.64 -0.2
57,044 + GFF389 0.64 +0.3
57,044 + GFF389 0.64 +0.1
57,045 - GFF389 0.65 -0.1
57,045 - GFF389 0.65 +0.2
57,129 - GFF389 0.72 +0.1
57,129 - GFF389 0.72 +0.1
57,284 + GFF389 0.86 -0.0
57,285 - GFF389 0.86 -1.1
57,285 - GFF389 0.86 -0.3
57,587 - +0.4
57,706 + +0.2
57,706 + +0.2
57,706 + -1.5
57,706 + -0.1
57,706 + -0.8
57,706 + +0.4
57,706 + +0.0
57,706 + +0.5
57,706 + -0.1
57,706 + +0.8
57,706 + +0.0
57,706 + -0.6
57,706 + -0.3
57,706 + +0.4
57,706 + -0.8
57,706 + -0.1
57,707 - +0.9
57,707 - +0.1
57,707 - +0.4
57,707 - -0.1
57,707 - +0.2
57,707 - +0.0
57,707 - -0.4
57,707 - +0.6
57,712 + +0.2
57,712 + -0.1
57,712 + +0.0
57,712 + -0.3
57,712 + -0.2
57,712 + -0.5
57,713 - -1.0
57,713 - -0.0
57,713 - -0.1
57,713 - +0.1
57,713 - +0.5
57,713 - +0.7
57,713 - +0.1
57,713 - -0.0
57,713 - +1.1
57,802 + GFF390 0.12 -0.5
57,802 + GFF390 0.12 +0.6
58,183 + GFF390 0.46 +0.1
58,184 - GFF390 0.46 +0.0
58,230 + GFF390 0.50 +0.7
58,230 + GFF390 0.50 -0.7
58,230 + GFF390 0.50 -0.7
58,231 - GFF390 0.50 +0.2
58,231 - GFF390 0.50 +0.1
58,231 - GFF390 0.50 +0.2
58,411 + GFF390 0.66 -0.1
58,411 + GFF390 0.66 -0.1
58,411 + GFF390 0.66 -0.2
58,412 - GFF390 0.66 +0.3
58,412 - GFF390 0.66 -0.2

Or see this region's nucleotide sequence