Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3851 and GFF3852 overlap by 4 nucleotides GFF3852 and GFF3853 are separated by 275 nucleotides GFF3853 and GFF5788 are separated by 22 nucleotides GFF5788 and GFF3854 are separated by 77 nucleotides
GFF3851 - Haloacetate dehalogenase H-1 (EC 3.8.1.3), at 762,260 to 763,171
GFF3851
GFF3852 - Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83), at 763,168 to 764,259
GFF3852
GFF3853 - DNA-binding protein HU-beta, at 764,535 to 764,807
GFF3853
GFF5788 - tRNA-Val-TAC, at 764,830 to 764,902
GFF5788
GFF3854 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 764,980 to 766,899
GFF3854
Position (kb) 763
764
765 Strain fitness (log2 ratio) -1
0
1 at 762.677 kb on + strand, within GFF3851 at 762.677 kb on + strand, within GFF3851 at 762.678 kb on - strand, within GFF3851 at 762.678 kb on - strand, within GFF3851 at 762.678 kb on - strand, within GFF3851 at 762.710 kb on + strand, within GFF3851 at 762.782 kb on + strand, within GFF3851 at 763.088 kb on + strand at 763.088 kb on + strand at 763.313 kb on - strand, within GFF3852 at 763.381 kb on + strand, within GFF3852 at 763.381 kb on + strand, within GFF3852 at 763.424 kb on + strand, within GFF3852 at 763.424 kb on + strand, within GFF3852 at 763.425 kb on - strand, within GFF3852 at 763.425 kb on - strand, within GFF3852 at 763.425 kb on - strand, within GFF3852 at 763.471 kb on + strand, within GFF3852 at 763.471 kb on + strand, within GFF3852 at 763.471 kb on + strand, within GFF3852 at 763.472 kb on - strand, within GFF3852 at 763.563 kb on + strand, within GFF3852 at 763.597 kb on + strand, within GFF3852 at 763.597 kb on + strand, within GFF3852 at 763.597 kb on + strand, within GFF3852 at 763.649 kb on + strand, within GFF3852 at 763.650 kb on - strand, within GFF3852 at 763.780 kb on + strand, within GFF3852 at 763.781 kb on - strand, within GFF3852 at 763.817 kb on - strand, within GFF3852 at 764.319 kb on + strand at 764.319 kb on + strand at 764.320 kb on - strand at 764.320 kb on - strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.396 kb on + strand at 764.396 kb on + strand at 764.396 kb on + strand at 764.397 kb on - strand at 764.440 kb on + strand at 764.741 kb on + strand, within GFF3853 at 764.837 kb on + strand at 764.837 kb on + strand at 764.837 kb on + strand at 764.837 kb on + strand at 764.837 kb on + strand at 764.838 kb on - strand, within GFF5788 at 764.838 kb on - strand, within GFF5788 at 764.838 kb on - strand, within GFF5788 at 764.863 kb on + strand, within GFF5788 at 764.863 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.873 kb on - strand, within GFF5788 at 764.873 kb on - strand, within GFF5788 at 764.964 kb on + strand at 764.965 kb on - strand at 764.965 kb on - strand at 765.010 kb on + strand at 765.010 kb on + strand at 765.010 kb on + strand at 765.011 kb on - strand at 765.011 kb on - strand at 765.011 kb on - strand at 765.073 kb on + strand at 765.074 kb on - strand at 765.120 kb on - strand at 765.232 kb on + strand, within GFF3854
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 762,677 + GFF3851 0.46 +0.8 762,677 + GFF3851 0.46 +0.1 762,678 - GFF3851 0.46 -0.3 762,678 - GFF3851 0.46 +0.1 762,678 - GFF3851 0.46 +0.0 762,710 + GFF3851 0.49 +1.1 762,782 + GFF3851 0.57 +0.4 763,088 + -0.3 763,088 + -0.8 763,313 - GFF3852 0.13 -0.2 763,381 + GFF3852 0.20 +0.1 763,381 + GFF3852 0.20 +1.1 763,424 + GFF3852 0.23 -1.3 763,424 + GFF3852 0.23 -0.5 763,425 - GFF3852 0.24 -1.7 763,425 - GFF3852 0.24 -0.5 763,425 - GFF3852 0.24 -0.8 763,471 + GFF3852 0.28 -0.3 763,471 + GFF3852 0.28 -0.6 763,471 + GFF3852 0.28 +1.2 763,472 - GFF3852 0.28 -0.1 763,563 + GFF3852 0.36 +0.4 763,597 + GFF3852 0.39 -0.1 763,597 + GFF3852 0.39 -0.0 763,597 + GFF3852 0.39 +0.3 763,649 + GFF3852 0.44 -0.7 763,650 - GFF3852 0.44 -0.3 763,780 + GFF3852 0.56 -0.7 763,781 - GFF3852 0.56 +1.0 763,817 - GFF3852 0.59 +1.2 764,319 + -0.4 764,319 + -0.3 764,320 - +1.2 764,320 - -0.2 764,368 + +0.1 764,368 + +0.3 764,368 + +0.9 764,368 + +0.1 764,368 + -0.0 764,368 + +0.4 764,368 + +0.3 764,368 + +0.4 764,369 - -0.2 764,369 - -0.3 764,369 - -0.0 764,369 - +0.3 764,369 - +0.0 764,369 - -0.3 764,396 + +0.0 764,396 + -0.2 764,396 + -0.4 764,397 - -0.3 764,440 + +0.2 764,741 + GFF3853 0.75 +0.5 764,837 + -0.5 764,837 + -0.1 764,837 + -0.3 764,837 + +0.8 764,837 + -0.5 764,838 - GFF5788 0.11 -0.0 764,838 - GFF5788 0.11 -1.0 764,838 - GFF5788 0.11 -0.5 764,863 + GFF5788 0.45 -0.8 764,863 + GFF5788 0.45 -1.3 764,872 + GFF5788 0.58 -0.5 764,872 + GFF5788 0.58 -1.0 764,872 + GFF5788 0.58 +0.5 764,872 + GFF5788 0.58 -0.4 764,873 - GFF5788 0.59 -1.0 764,873 - GFF5788 0.59 +0.5 764,964 + +0.0 764,965 - -0.3 764,965 - -0.1 765,010 + -1.1 765,010 + -0.3 765,010 + +1.3 765,011 - +0.2 765,011 - -0.2 765,011 - +0.1 765,073 + +0.4 765,074 - +0.4 765,120 - -1.5 765,232 + GFF3854 0.13 +0.2
Or see this region's nucleotide sequence