Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3838

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
745,178	+		GFF3837	0.26	+0.1
745,178	+		GFF3837	0.26	-0.0
745,255	+		GFF3837	0.33	+1.5
745,732	+		GFF3837	0.73	+0.1
745,733	-		GFF3837	0.73	-0.0
745,733	-		GFF3837	0.73	-1.0
746,047	+				-0.2
746,581	+		GFF3838	0.79	+1.0
746,581	+		GFF3838	0.79	+0.0
746,728	+				+1.0
746,729	+				-2.1
746,730	-				-1.7
746,730	-				-0.5
746,730	-				-0.5
746,730	-				-0.4
746,730	-				-0.2
746,730	-				-0.6
746,730	-				-0.9
746,730	-				-1.4
746,730	-				+0.2
746,730	-				-0.4
746,730	-				-0.1
746,730	-				+0.4
746,730	-				-0.4
746,730	-				+0.3
746,730	-				-0.3
746,730	-				-0.3
746,730	-				+0.3
746,771	-				-0.4
746,772	+				+0.3
746,772	+				+0.2
746,772	+				+0.4
746,772	+				-0.0
746,773	-				+1.6
746,776	+				-0.7
746,790	+				-0.5
746,795	-				+0.1
746,795	-				-0.6
746,796	+				+0.5
746,796	+				+0.1
746,797	-				-0.1
746,832	+				-0.4
746,832	+				+1.3
746,841	+				-0.1
746,841	+				-0.3
746,841	+				+0.2
746,842	-				+0.0
746,842	-				-0.5
746,874	-				-0.4
747,252	+		GFF3839	0.23	-0.3
747,252	+		GFF3839	0.23	-0.8
747,253	-		GFF3839	0.24	+0.3
747,378	+		GFF3839	0.34	-0.4
747,378	+		GFF3839	0.34	-0.4
747,468	+		GFF3839	0.42	-0.5
747,469	-		GFF3839	0.42	+0.8
747,588	+		GFF3839	0.52	+0.0
747,588	+		GFF3839	0.52	+0.1
747,588	+		GFF3839	0.52	+0.7
747,589	-		GFF3839	0.52	-0.2
747,589	-		GFF3839	0.52	+0.0
747,589	-		GFF3839	0.52	-0.0