Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3696 and GFF3697 overlap by 4 nucleotides GFF3697 and GFF3698 are separated by 68 nucleotides GFF3698 and GFF3699 are separated by 119 nucleotides
GFF3696 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 586,491 to 587,099
GFF3696
GFF3697 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 587,096 to 587,569
GFF3697
GFF3698 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 587,638 to 588,969
GFF3698
GFF3699 - ABC transporter ATP-binding protein, at 589,089 to 590,873
GFF3699
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1 at 586.845 kb on + strand, within GFF3696 at 587.165 kb on + strand, within GFF3697 at 587.165 kb on + strand, within GFF3697 at 587.165 kb on + strand, within GFF3697 at 587.166 kb on - strand, within GFF3697 at 587.166 kb on - strand, within GFF3697 at 587.166 kb on - strand, within GFF3697 at 587.586 kb on + strand at 587.645 kb on + strand at 588.337 kb on + strand, within GFF3698 at 588.407 kb on + strand, within GFF3698 at 588.407 kb on + strand, within GFF3698 at 588.408 kb on - strand, within GFF3698 at 588.827 kb on + strand, within GFF3698 at 588.857 kb on + strand at 588.893 kb on + strand at 588.893 kb on + strand at 588.894 kb on - strand at 589.020 kb on + strand at 589.020 kb on + strand at 589.020 kb on + strand at 589.080 kb on + strand at 589.081 kb on - strand at 589.123 kb on + strand at 589.429 kb on + strand, within GFF3699 at 589.429 kb on + strand, within GFF3699 at 589.657 kb on + strand, within GFF3699 at 589.658 kb on - strand, within GFF3699 at 589.658 kb on - strand, within GFF3699 at 589.660 kb on + strand, within GFF3699 at 589.661 kb on - strand, within GFF3699 at 589.661 kb on - strand, within GFF3699 at 589.661 kb on - strand, within GFF3699 at 589.936 kb on + strand, within GFF3699 at 589.936 kb on + strand, within GFF3699 at 589.936 kb on + strand, within GFF3699 at 589.937 kb on - strand, within GFF3699 at 589.937 kb on - strand, within GFF3699
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 586,845 + GFF3696 0.58 +0.2 587,165 + GFF3697 0.15 -0.4 587,165 + GFF3697 0.15 +0.1 587,165 + GFF3697 0.15 -0.0 587,166 - GFF3697 0.15 +0.0 587,166 - GFF3697 0.15 +0.8 587,166 - GFF3697 0.15 -0.7 587,586 + -0.3 587,645 + -0.0 588,337 + GFF3698 0.52 -1.8 588,407 + GFF3698 0.58 -1.3 588,407 + GFF3698 0.58 -1.3 588,408 - GFF3698 0.58 -0.4 588,827 + GFF3698 0.89 -0.6 588,857 + -0.8 588,893 + -1.4 588,893 + -1.3 588,894 - -1.7 589,020 + +0.2 589,020 + +1.3 589,020 + +1.2 589,080 + +0.0 589,081 - -0.2 589,123 + -1.8 589,429 + GFF3699 0.19 -0.5 589,429 + GFF3699 0.19 +0.7 589,657 + GFF3699 0.32 +0.0 589,658 - GFF3699 0.32 -0.0 589,658 - GFF3699 0.32 -0.6 589,660 + GFF3699 0.32 +0.3 589,661 - GFF3699 0.32 +1.0 589,661 - GFF3699 0.32 +0.4 589,661 - GFF3699 0.32 +0.8 589,936 + GFF3699 0.47 +0.1 589,936 + GFF3699 0.47 +0.2 589,936 + GFF3699 0.47 -0.2 589,937 - GFF3699 0.48 +0.1 589,937 - GFF3699 0.48 -0.4
Or see this region's nucleotide sequence