Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3635 and GFF3636 are separated by 64 nucleotides GFF3636 and GFF3637 are separated by 50 nucleotides GFF3637 and GFF3638 are separated by 142 nucleotides GFF3638 and GFF3639 are separated by 136 nucleotides GFF3639 and GFF3640 are separated by 67 nucleotides
GFF3635 - Nitrogen regulation protein NR(I), at 519,560 to 520,990
GFF3635
GFF3636 - hypothetical protein, at 521,055 to 521,291
GFF3636
GFF3637 - hypothetical protein, at 521,342 to 521,800
GFF3637
GFF3638 - sensory box histidine kinase/response regulator, at 521,943 to 523,790
GFF3638
GFF3639 - Outer membrane protein A precursor, at 523,927 to 524,598
GFF3639
GFF3640 - Two-component hybrid sensor and regulator, at 524,666 to 525,127
GFF3640
Position (kb) 521
522
523
524 Strain fitness (log2 ratio) -2
-1
0
1 at 520.953 kb on - strand at 521.859 kb on - strand at 521.881 kb on + strand at 521.881 kb on + strand at 521.888 kb on + strand at 521.889 kb on - strand at 522.073 kb on + strand at 522.169 kb on + strand, within GFF3638 at 522.169 kb on + strand, within GFF3638 at 522.169 kb on + strand, within GFF3638 at 522.170 kb on - strand, within GFF3638 at 522.170 kb on - strand, within GFF3638 at 522.839 kb on + strand, within GFF3638 at 522.839 kb on + strand, within GFF3638 at 522.982 kb on + strand, within GFF3638 at 522.983 kb on - strand, within GFF3638 at 522.983 kb on - strand, within GFF3638 at 523.013 kb on - strand, within GFF3638 at 523.013 kb on - strand, within GFF3638 at 523.294 kb on + strand, within GFF3638 at 523.295 kb on - strand, within GFF3638 at 523.649 kb on - strand at 524.128 kb on + strand, within GFF3639 at 524.209 kb on + strand, within GFF3639 at 524.209 kb on + strand, within GFF3639 at 524.210 kb on - strand, within GFF3639 at 524.210 kb on - strand, within GFF3639 at 524.210 kb on - strand, within GFF3639 at 524.219 kb on - strand, within GFF3639 at 524.219 kb on - strand, within GFF3639 at 524.219 kb on - strand, within GFF3639 at 524.264 kb on - strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.462 kb on - strand, within GFF3639 at 524.462 kb on - strand, within GFF3639 at 524.581 kb on + strand at 524.649 kb on + strand at 524.649 kb on + strand at 524.649 kb on + strand at 524.649 kb on + strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.653 kb on + strand at 524.653 kb on + strand at 524.653 kb on + strand at 524.654 kb on - strand at 524.654 kb on - strand at 524.654 kb on - strand at 524.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 520,953 - +0.3 521,859 - -0.8 521,881 + -0.4 521,881 + +0.0 521,888 + +0.6 521,889 - -0.0 522,073 + -0.1 522,169 + GFF3638 0.12 +0.2 522,169 + GFF3638 0.12 +0.0 522,169 + GFF3638 0.12 +1.0 522,170 - GFF3638 0.12 +0.4 522,170 - GFF3638 0.12 -0.3 522,839 + GFF3638 0.48 +0.7 522,839 + GFF3638 0.48 -0.0 522,982 + GFF3638 0.56 -0.5 522,983 - GFF3638 0.56 +0.0 522,983 - GFF3638 0.56 +0.2 523,013 - GFF3638 0.58 +1.1 523,013 - GFF3638 0.58 +0.8 523,294 + GFF3638 0.73 -0.2 523,295 - GFF3638 0.73 +0.4 523,649 - -1.0 524,128 + GFF3639 0.30 -0.1 524,209 + GFF3639 0.42 -0.2 524,209 + GFF3639 0.42 +0.8 524,210 - GFF3639 0.42 -0.2 524,210 - GFF3639 0.42 +0.1 524,210 - GFF3639 0.42 -0.4 524,219 - GFF3639 0.43 +0.1 524,219 - GFF3639 0.43 -0.4 524,219 - GFF3639 0.43 -0.1 524,264 - GFF3639 0.50 +0.6 524,386 + GFF3639 0.68 -0.2 524,386 + GFF3639 0.68 -1.2 524,386 + GFF3639 0.68 -0.1 524,386 + GFF3639 0.68 -0.5 524,386 + GFF3639 0.68 +0.3 524,387 - GFF3639 0.68 -0.6 524,387 - GFF3639 0.68 +0.0 524,387 - GFF3639 0.68 +0.3 524,387 - GFF3639 0.68 +0.3 524,462 - GFF3639 0.80 -0.4 524,462 - GFF3639 0.80 +0.3 524,581 + -0.2 524,649 + -2.3 524,649 + +0.7 524,649 + +0.8 524,649 + +0.1 524,650 - +0.1 524,650 - +0.3 524,650 - -0.3 524,650 - +0.2 524,650 - +0.1 524,650 - +0.1 524,650 - +0.5 524,653 + -0.5 524,653 + +0.2 524,653 + -0.1 524,654 - -0.0 524,654 - -0.2 524,654 - -0.1 524,705 + -0.3
Or see this region's nucleotide sequence