Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3439 and GFF3440 overlap by 4 nucleotides GFF3440 and GFF3441 are separated by 44 nucleotides GFF3441 and GFF3442 are separated by 117 nucleotides
GFF3439 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 320,976 to 321,458
GFF3439
GFF3440 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 321,455 to 322,090
GFF3440
GFF3441 - Cation transport protein chaC, at 322,135 to 322,689
GFF3441
GFF3442 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 322,807 to 323,319
GFF3442
Position (kb) 322
323 Strain fitness (log2 ratio) -2
-1
0
1 at 321.456 kb on + strand at 322.101 kb on + strand at 322.101 kb on + strand at 322.101 kb on + strand at 322.102 kb on - strand at 322.102 kb on - strand at 322.102 kb on - strand at 322.102 kb on - strand at 322.217 kb on + strand, within GFF3441 at 322.217 kb on + strand, within GFF3441 at 322.217 kb on + strand, within GFF3441 at 322.295 kb on + strand, within GFF3441 at 322.296 kb on - strand, within GFF3441 at 322.320 kb on + strand, within GFF3441 at 322.380 kb on - strand, within GFF3441 at 322.512 kb on - strand, within GFF3441 at 322.512 kb on - strand, within GFF3441 at 322.623 kb on - strand, within GFF3441 at 322.757 kb on + strand at 322.757 kb on + strand at 322.758 kb on - strand at 322.758 kb on - strand at 322.758 kb on - strand at 322.785 kb on + strand at 322.785 kb on + strand at 322.786 kb on - strand at 322.786 kb on - strand at 322.902 kb on + strand, within GFF3442 at 323.029 kb on + strand, within GFF3442 at 323.030 kb on - strand, within GFF3442 at 323.481 kb on + strand at 323.482 kb on - strand at 323.483 kb on + strand at 323.496 kb on + strand at 323.497 kb on - strand at 323.507 kb on + strand at 323.508 kb on - strand at 323.655 kb on + strand at 323.655 kb on + strand at 323.656 kb on - strand at 323.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 321,456 + -0.2 322,101 + -0.2 322,101 + -0.0 322,101 + -0.3 322,102 - -0.4 322,102 - +0.2 322,102 - +0.1 322,102 - -0.2 322,217 + GFF3441 0.15 -0.0 322,217 + GFF3441 0.15 -0.5 322,217 + GFF3441 0.15 +0.5 322,295 + GFF3441 0.29 -0.8 322,296 - GFF3441 0.29 -0.6 322,320 + GFF3441 0.33 -0.8 322,380 - GFF3441 0.44 +0.2 322,512 - GFF3441 0.68 -0.8 322,512 - GFF3441 0.68 +0.6 322,623 - GFF3441 0.88 -0.4 322,757 + +0.2 322,757 + -0.2 322,758 - -1.1 322,758 - +0.1 322,758 - +0.3 322,785 + -0.0 322,785 + -1.5 322,786 - +0.8 322,786 - -0.5 322,902 + GFF3442 0.19 +0.1 323,029 + GFF3442 0.43 -0.1 323,030 - GFF3442 0.43 -2.1 323,481 + -0.1 323,482 - -0.0 323,483 + -0.3 323,496 + -0.0 323,497 - -0.1 323,507 + -0.4 323,508 - +0.6 323,655 + -0.2 323,655 + -0.0 323,656 - -0.4 323,656 - -0.1
Or see this region's nucleotide sequence