Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3389

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
273,821	+		GFF3389	0.35	+0.9
273,821	+		GFF3389	0.35	-0.4
273,821	+		GFF3389	0.35	-0.2
273,822	-		GFF3389	0.35	-0.7
273,822	-		GFF3389	0.35	+1.1
273,822	-		GFF3389	0.35	-0.4
273,822	-		GFF3389	0.35	-0.5
273,822	-		GFF3389	0.35	+0.1
273,822	-		GFF3389	0.35	-0.1
273,822	-		GFF3389	0.35	-0.9
273,918	-		GFF3389	0.45	+1.6
273,956	+		GFF3389	0.48	+0.6
273,956	+		GFF3389	0.48	-0.1
273,956	+		GFF3389	0.48	-0.2
274,527	+				+1.2
274,527	+				-0.6
274,527	+				-0.1
274,651	-				-0.1
275,151	+		GFF3390	0.52	+0.5
275,152	-		GFF3390	0.52	-1.0
275,152	-		GFF3390	0.52	-0.4
275,214	+		GFF3390	0.57	+0.0
275,223	+		GFF3390	0.58	-0.4
275,224	-		GFF3390	0.58	+0.6
275,377	-		GFF3390	0.71	+0.1