Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3307 and GFF3308 overlap by 4 nucleotides GFF3308 and GFF3309 are separated by 10 nucleotides GFF3309 and GFF3310 are separated by 95 nucleotides
GFF3307 - Acetylornithine deacetylase (EC 3.5.1.16), at 193,304 to 194,551
GFF3307
GFF3308 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 194,548 to 196,341
GFF3308
GFF3309 - Uricase (urate oxidase) (EC 1.7.3.3), at 196,352 to 197,206
GFF3309
GFF3310 - Transcriptional regulator, GntR family, at 197,302 to 198,027
GFF3310
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 195.056 kb on + strand, within GFF3308 at 195.152 kb on + strand, within GFF3308 at 195.417 kb on - strand, within GFF3308 at 195.466 kb on + strand, within GFF3308 at 195.564 kb on - strand, within GFF3308 at 195.720 kb on - strand, within GFF3308 at 196.581 kb on + strand, within GFF3309 at 196.608 kb on + strand, within GFF3309 at 196.609 kb on - strand, within GFF3309 at 196.728 kb on + strand, within GFF3309 at 196.729 kb on - strand, within GFF3309 at 196.731 kb on + strand, within GFF3309 at 196.732 kb on - strand, within GFF3309 at 196.803 kb on + strand, within GFF3309 at 196.803 kb on + strand, within GFF3309 at 196.803 kb on + strand, within GFF3309 at 197.065 kb on - strand, within GFF3309 at 197.070 kb on + strand, within GFF3309 at 197.071 kb on - strand, within GFF3309 at 197.295 kb on + strand at 197.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 195,056 + GFF3308 0.28 -2.8 195,152 + GFF3308 0.34 -0.8 195,417 - GFF3308 0.48 -1.5 195,466 + GFF3308 0.51 -2.2 195,564 - GFF3308 0.57 -0.4 195,720 - GFF3308 0.65 -1.0 196,581 + GFF3309 0.27 -0.1 196,608 + GFF3309 0.30 +0.6 196,609 - GFF3309 0.30 -0.7 196,728 + GFF3309 0.44 +0.6 196,729 - GFF3309 0.44 -0.5 196,731 + GFF3309 0.44 -0.3 196,732 - GFF3309 0.44 -0.5 196,803 + GFF3309 0.53 +0.8 196,803 + GFF3309 0.53 -0.2 196,803 + GFF3309 0.53 +0.2 197,065 - GFF3309 0.83 -1.1 197,070 + GFF3309 0.84 +0.0 197,071 - GFF3309 0.84 -0.4 197,295 + +0.4 197,296 - -0.8
Or see this region's nucleotide sequence