Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3025 and GFF3026 are separated by 132 nucleotides GFF3026 and GFF3027 are separated by 102 nucleotides GFF3027 and GFF3028 overlap by 4 nucleotides
GFF3025 - Multidrug resistance protein B, at 101,611 to 103,116
GFF3025
GFF3026 - putative membrane protein, at 103,249 to 104,328
GFF3026
GFF3027 - Tricarboxylate transport transcriptional regulator TctD, at 104,431 to 105,099
GFF3027
GFF3028 - Tricarboxylate transport sensor protein TctE, at 105,096 to 106,517
GFF3028
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.785 kb on + strand, within GFF3025 at 102.786 kb on - strand, within GFF3025 at 102.845 kb on + strand, within GFF3025 at 102.845 kb on + strand, within GFF3025 at 102.846 kb on - strand, within GFF3025 at 102.846 kb on - strand, within GFF3025 at 102.846 kb on - strand, within GFF3025 at 103.059 kb on - strand at 103.207 kb on + strand at 103.207 kb on + strand at 103.207 kb on + strand at 103.207 kb on + strand at 103.208 kb on - strand at 103.209 kb on + strand at 103.209 kb on + strand at 103.210 kb on - strand at 103.210 kb on - strand at 103.318 kb on + strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.495 kb on + strand, within GFF3026 at 103.495 kb on + strand, within GFF3026 at 103.495 kb on + strand, within GFF3026 at 103.496 kb on - strand, within GFF3026 at 103.496 kb on - strand, within GFF3026 at 103.612 kb on + strand, within GFF3026 at 103.612 kb on + strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.777 kb on + strand, within GFF3026 at 104.048 kb on - strand, within GFF3026 at 104.398 kb on + strand at 104.398 kb on + strand at 104.398 kb on + strand at 104.399 kb on - strand at 104.430 kb on + strand at 104.430 kb on + strand at 104.430 kb on + strand at 104.430 kb on + strand at 104.431 kb on + strand at 104.431 kb on - strand at 104.431 kb on - strand at 104.431 kb on - strand at 104.563 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.831 kb on - strand, within GFF3027 at 104.831 kb on - strand, within GFF3027 at 105.076 kb on + strand at 105.077 kb on - strand at 105.077 kb on - strand at 105.077 kb on - strand at 105.077 kb on - strand at 105.232 kb on - strand at 105.232 kb on - strand at 105.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 102,785 + GFF3025 0.78 +0.1 102,786 - GFF3025 0.78 +0.1 102,845 + GFF3025 0.82 +0.7 102,845 + GFF3025 0.82 +0.8 102,846 - GFF3025 0.82 -0.2 102,846 - GFF3025 0.82 +0.8 102,846 - GFF3025 0.82 -0.2 103,059 - +0.8 103,207 + -0.4 103,207 + -0.2 103,207 + -0.3 103,207 + +0.8 103,208 - -0.0 103,209 + +0.3 103,209 + -0.2 103,210 - -0.2 103,210 - +0.6 103,318 + +0.3 103,319 - +0.1 103,319 - -0.2 103,319 - +1.0 103,319 - +0.3 103,319 - +0.1 103,495 + GFF3026 0.23 +0.6 103,495 + GFF3026 0.23 -0.4 103,495 + GFF3026 0.23 +0.1 103,496 - GFF3026 0.23 +0.8 103,496 - GFF3026 0.23 +0.2 103,612 + GFF3026 0.34 -0.5 103,612 + GFF3026 0.34 -1.4 103,613 - GFF3026 0.34 +0.5 103,613 - GFF3026 0.34 +0.1 103,613 - GFF3026 0.34 +0.2 103,693 + GFF3026 0.41 +0.1 103,693 + GFF3026 0.41 +0.5 103,693 + GFF3026 0.41 +1.6 103,694 - GFF3026 0.41 +0.2 103,694 - GFF3026 0.41 +0.5 103,694 - GFF3026 0.41 -1.8 103,694 - GFF3026 0.41 +0.2 103,777 + GFF3026 0.49 +0.2 104,048 - GFF3026 0.74 -0.7 104,398 + +1.8 104,398 + +0.6 104,398 + +1.7 104,399 - +1.0 104,430 + -0.5 104,430 + +1.8 104,430 + +0.8 104,430 + +0.3 104,431 + +0.1 104,431 - -0.1 104,431 - +0.1 104,431 - -0.0 104,563 + GFF3027 0.20 -0.6 104,830 + GFF3027 0.60 +0.3 104,830 + GFF3027 0.60 +1.2 104,830 + GFF3027 0.60 +0.2 104,830 + GFF3027 0.60 +0.3 104,831 - GFF3027 0.60 +0.2 104,831 - GFF3027 0.60 -0.4 105,076 + -0.2 105,077 - +0.6 105,077 - +0.2 105,077 - +0.1 105,077 - -0.1 105,232 - +0.7 105,232 - +1.1 105,232 - -0.1
Or see this region's nucleotide sequence