Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF28 and GFF29 are separated by 174 nucleotides GFF29 and GFF30 are separated by 15 nucleotides GFF30 and GFF31 overlap by 4 nucleotides GFF31 and GFF32 are separated by 8 nucleotides
GFF28 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 25,954 to 26,481
GFF28
GFF29 - Transcriptional regulator, MarR family, at 26,656 to 27,123
GFF29
GFF30 - Cytosine deaminase (EC 3.5.4.1), at 27,139 to 28,488
GFF30
GFF31 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 28,485 to 29,273
GFF31
GFF32 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 29,282 to 30,058
GFF32
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.313 kb on - strand, within GFF28 at 26.313 kb on - strand, within GFF28 at 26.313 kb on - strand, within GFF28 at 26.378 kb on + strand, within GFF28 at 26.532 kb on - strand at 26.547 kb on + strand at 26.555 kb on - strand at 26.657 kb on + strand at 26.658 kb on - strand at 26.658 kb on - strand at 26.658 kb on - strand at 26.963 kb on + strand, within GFF29 at 26.963 kb on + strand, within GFF29 at 26.964 kb on - strand, within GFF29 at 26.964 kb on - strand, within GFF29 at 27.236 kb on + strand at 27.237 kb on - strand at 27.237 kb on - strand at 27.413 kb on + strand, within GFF30 at 27.414 kb on - strand, within GFF30 at 27.428 kb on + strand, within GFF30 at 27.429 kb on - strand, within GFF30 at 27.548 kb on + strand, within GFF30 at 27.549 kb on - strand, within GFF30 at 28.558 kb on + strand at 28.747 kb on + strand, within GFF31 at 28.805 kb on - strand, within GFF31 at 28.993 kb on + strand, within GFF31 at 28.994 kb on - strand, within GFF31 at 28.994 kb on - strand, within GFF31 at 29.353 kb on - strand at 29.463 kb on + strand, within GFF32 at 29.463 kb on + strand, within GFF32
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 26,313 - GFF28 0.68 -0.8 26,313 - GFF28 0.68 -0.1 26,313 - GFF28 0.68 +0.6 26,378 + GFF28 0.80 +0.2 26,532 - +0.2 26,547 + +0.5 26,555 - -0.6 26,657 + -0.2 26,658 - -1.6 26,658 - -0.1 26,658 - +0.2 26,963 + GFF29 0.66 +0.2 26,963 + GFF29 0.66 -0.5 26,964 - GFF29 0.66 -1.5 26,964 - GFF29 0.66 -0.0 27,236 + +0.2 27,237 - -0.9 27,237 - +0.0 27,413 + GFF30 0.20 -0.0 27,414 - GFF30 0.20 -1.0 27,428 + GFF30 0.21 -0.3 27,429 - GFF30 0.21 +0.1 27,548 + GFF30 0.30 +0.5 27,549 - GFF30 0.30 -0.5 28,558 + +0.4 28,747 + GFF31 0.33 +0.1 28,805 - GFF31 0.41 +1.5 28,993 + GFF31 0.64 +0.0 28,994 - GFF31 0.65 -0.3 28,994 - GFF31 0.65 +0.3 29,353 - +1.0 29,463 + GFF32 0.23 -0.4 29,463 + GFF32 0.23 +0.3
Or see this region's nucleotide sequence