Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2902 and GFF2903 are separated by 152 nucleotides GFF2903 and GFF2904 are separated by 51 nucleotides GFF2904 and GFF2905 are separated by 47 nucleotides
GFF2902 - Tricarboxylate transport protein TctC, at 491,294 to 492,280
GFF2902
GFF2903 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 492,433 to 492,612
GFF2903
GFF2904 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 492,664 to 493,911
GFF2904
GFF2905 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 493,959 to 494,768
GFF2905
Position (kb) 492
493
494 Strain fitness (log2 ratio) -1
0
1
2 at 491.733 kb on + strand, within GFF2902 at 491.856 kb on + strand, within GFF2902 at 491.856 kb on + strand, within GFF2902 at 491.857 kb on - strand, within GFF2902 at 491.940 kb on + strand, within GFF2902 at 491.940 kb on + strand, within GFF2902 at 492.027 kb on + strand, within GFF2902 at 492.028 kb on - strand, within GFF2902 at 492.280 kb on + strand at 492.280 kb on + strand at 492.280 kb on + strand at 492.280 kb on + strand at 492.281 kb on - strand at 492.281 kb on - strand at 492.343 kb on - strand at 492.358 kb on + strand at 492.358 kb on + strand at 492.358 kb on + strand at 492.359 kb on - strand at 492.435 kb on - strand at 492.440 kb on + strand at 492.440 kb on + strand at 492.441 kb on - strand at 493.056 kb on - strand, within GFF2904 at 493.188 kb on - strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.217 kb on + strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.218 kb on - strand, within GFF2904 at 493.226 kb on + strand, within GFF2904 at 493.226 kb on + strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.227 kb on - strand, within GFF2904 at 493.376 kb on + strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.377 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.506 kb on - strand, within GFF2904 at 493.578 kb on - strand, within GFF2904 at 493.604 kb on + strand, within GFF2904 at 493.604 kb on + strand, within GFF2904 at 493.604 kb on + strand, within GFF2904 at 493.605 kb on - strand, within GFF2904 at 493.605 kb on - strand, within GFF2904 at 493.605 kb on - strand, within GFF2904 at 493.625 kb on + strand, within GFF2904 at 493.625 kb on + strand, within GFF2904 at 493.987 kb on + strand at 493.987 kb on + strand at 493.987 kb on + strand at 493.987 kb on + strand at 493.988 kb on - strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.039 kb on - strand at 494.116 kb on + strand, within GFF2905 at 494.116 kb on + strand, within GFF2905 at 494.117 kb on - strand, within GFF2905 at 494.117 kb on - strand, within GFF2905 at 494.332 kb on + strand, within GFF2905 at 494.332 kb on + strand, within GFF2905 at 494.332 kb on + strand, within GFF2905 at 494.333 kb on - strand, within GFF2905 at 494.333 kb on - strand, within GFF2905 at 494.374 kb on + strand, within GFF2905 at 494.374 kb on + strand, within GFF2905 at 494.375 kb on - strand, within GFF2905 at 494.375 kb on - strand, within GFF2905 at 494.380 kb on + strand, within GFF2905 at 494.381 kb on - strand, within GFF2905 at 494.381 kb on - strand, within GFF2905 at 494.381 kb on - strand, within GFF2905
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 491,733 + GFF2902 0.44 +0.7 491,856 + GFF2902 0.57 -0.0 491,856 + GFF2902 0.57 -1.0 491,857 - GFF2902 0.57 +0.2 491,940 + GFF2902 0.65 +0.8 491,940 + GFF2902 0.65 +0.3 492,027 + GFF2902 0.74 -1.2 492,028 - GFF2902 0.74 -0.1 492,280 + -0.5 492,280 + +0.1 492,280 + -0.2 492,280 + -0.2 492,281 - -0.1 492,281 - +2.1 492,343 - -0.0 492,358 + -0.6 492,358 + +0.2 492,358 + +0.1 492,359 - +0.4 492,435 - -0.0 492,440 + -0.4 492,440 + -0.3 492,441 - -1.6 493,056 - GFF2904 0.31 +0.2 493,188 - GFF2904 0.42 -0.6 493,217 + GFF2904 0.44 +1.2 493,217 + GFF2904 0.44 -1.0 493,217 + GFF2904 0.44 -0.5 493,217 + GFF2904 0.44 -0.5 493,218 - GFF2904 0.44 -0.8 493,218 - GFF2904 0.44 -0.0 493,218 - GFF2904 0.44 -0.3 493,218 - GFF2904 0.44 +0.1 493,226 + GFF2904 0.45 +0.2 493,226 + GFF2904 0.45 +1.1 493,227 - GFF2904 0.45 -0.2 493,227 - GFF2904 0.45 -1.0 493,227 - GFF2904 0.45 -0.7 493,227 - GFF2904 0.45 -0.6 493,376 + GFF2904 0.57 -0.3 493,377 - GFF2904 0.57 +0.1 493,377 - GFF2904 0.57 -0.6 493,377 - GFF2904 0.57 -0.1 493,377 - GFF2904 0.57 +0.3 493,506 - GFF2904 0.67 -0.2 493,506 - GFF2904 0.67 -0.6 493,506 - GFF2904 0.67 -0.1 493,506 - GFF2904 0.67 -0.0 493,578 - GFF2904 0.73 +0.4 493,604 + GFF2904 0.75 -0.6 493,604 + GFF2904 0.75 -0.3 493,604 + GFF2904 0.75 +0.8 493,605 - GFF2904 0.75 -0.3 493,605 - GFF2904 0.75 +1.4 493,605 - GFF2904 0.75 -0.4 493,625 + GFF2904 0.77 +0.2 493,625 + GFF2904 0.77 -0.4 493,987 + +0.6 493,987 + +1.0 493,987 + -0.6 493,987 + -0.0 493,988 - -0.1 494,039 - +0.3 494,039 - +1.0 494,039 - +0.1 494,039 - -0.0 494,116 + GFF2905 0.19 -0.1 494,116 + GFF2905 0.19 -0.3 494,117 - GFF2905 0.20 -0.8 494,117 - GFF2905 0.20 +0.5 494,332 + GFF2905 0.46 -0.3 494,332 + GFF2905 0.46 +0.5 494,332 + GFF2905 0.46 -0.9 494,333 - GFF2905 0.46 +0.1 494,333 - GFF2905 0.46 -0.5 494,374 + GFF2905 0.51 +0.0 494,374 + GFF2905 0.51 +0.3 494,375 - GFF2905 0.51 -0.3 494,375 - GFF2905 0.51 +1.9 494,380 + GFF2905 0.52 +0.5 494,381 - GFF2905 0.52 +1.1 494,381 - GFF2905 0.52 +0.8 494,381 - GFF2905 0.52 -0.9
Or see this region's nucleotide sequence