Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2848

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2846 and GFF2847 are separated by 207 nucleotidesGFF2847 and GFF2848 overlap by 1 nucleotidesGFF2848 and GFF2849 are separated by 57 nucleotidesGFF2849 and GFF2850 are separated by 87 nucleotides GFF2846 - Transcriptional regulator, AraC family, at 436,476 to 437,441 GFF2846 GFF2847 - hypothetical protein, at 437,649 to 437,810 GFF2847 GFF2848 - hypothetical protein, at 437,810 to 437,953 GFF2848 GFF2849 - Type IV pilin PilA, at 438,011 to 438,862 GFF2849 GFF2850 - Proline sensor-regulator PrlR, at 438,950 to 439,570 GFF2850 Position (kb) 437 438Strain fitness (log2 ratio) -2 -1 0 1 2at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.241 kb on + strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.359 kb on + strandat 437.359 kb on + strandat 437.359 kb on + strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.477 kb on - strandat 437.477 kb on - strandat 437.515 kb on + strandat 437.773 kb on + strand, within GFF2847at 437.773 kb on + strand, within GFF2847at 437.773 kb on + strand, within GFF2847at 437.773 kb on + strand, within GFF2847at 437.811 kb on + strandat 437.812 kb on - strandat 437.812 kb on - strandat 437.830 kb on - strand, within GFF2848at 437.830 kb on - strand, within GFF2848at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.156 kb on - strand, within GFF2849at 438.156 kb on - strand, within GFF2849at 438.156 kb on - strand, within GFF2849at 438.200 kb on + strand, within GFF2849at 438.200 kb on + strand, within GFF2849at 438.201 kb on - strand, within GFF2849at 438.201 kb on - strand, within GFF2849at 438.201 kb on - strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.300 kb on - strand, within GFF2849at 438.300 kb on - strand, within GFF2849at 438.300 kb on - strand, within GFF2849at 438.351 kb on - strand, within GFF2849at 438.351 kb on - strand, within GFF2849at 438.359 kb on + strand, within GFF2849at 438.359 kb on + strand, within GFF2849at 438.359 kb on + strand, within GFF2849at 438.360 kb on - strand, within GFF2849at 438.360 kb on - strand, within GFF2849at 438.419 kb on + strand, within GFF2849at 438.419 kb on + strand, within GFF2849at 438.419 kb on + strand, within GFF2849at 438.420 kb on - strand, within GFF2849at 438.420 kb on - strand, within GFF2849at 438.420 kb on - strand, within GFF2849at 438.420 kb on - strand, within GFF2849at 438.533 kb on + strand, within GFF2849at 438.533 kb on + strand, within GFF2849at 438.533 kb on + strand, within GFF2849at 438.533 kb on + strand, within GFF2849at 438.534 kb on - strand, within GFF2849at 438.534 kb on - strand, within GFF2849at 438.534 kb on - strand, within GFF2849at 438.569 kb on + strand, within GFF2849at 438.569 kb on + strand, within GFF2849at 438.569 kb on + strand, within GFF2849at 438.570 kb on - strand, within GFF2849at 438.570 kb on - strand, within GFF2849at 438.570 kb on - strand, within GFF2849at 438.570 kb on - strand, within GFF2849at 438.605 kb on + strand, within GFF2849at 438.605 kb on + strand, within GFF2849at 438.606 kb on - strand, within GFF2849at 438.606 kb on - strand, within GFF2849at 438.668 kb on + strand, within GFF2849at 438.668 kb on + strand, within GFF2849at 438.668 kb on + strand, within GFF2849at 438.713 kb on + strand, within GFF2849at 438.714 kb on - strand, within GFF2849

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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437,188 + GFF2846 0.74 -0.2
437,188 + GFF2846 0.74 -0.1
437,188 + GFF2846 0.74 -0.6
437,188 + GFF2846 0.74 -1.6
437,188 + GFF2846 0.74 +0.5
437,189 - GFF2846 0.74 -0.1
437,189 - GFF2846 0.74 +0.2
437,189 - GFF2846 0.74 -0.8
437,189 - GFF2846 0.74 +0.0
437,189 - GFF2846 0.74 -2.4
437,189 - GFF2846 0.74 +0.1
437,194 + GFF2846 0.74 +0.2
437,194 + GFF2846 0.74 +0.3
437,194 + GFF2846 0.74 -0.1
437,194 + GFF2846 0.74 -0.7
437,194 + GFF2846 0.74 -0.9
437,194 + GFF2846 0.74 -0.0
437,194 + GFF2846 0.74 -0.5
437,194 + GFF2846 0.74 -0.3
437,194 + GFF2846 0.74 +0.2
437,194 + GFF2846 0.74 -0.8
437,195 - GFF2846 0.74 +0.2
437,195 - GFF2846 0.74 +0.4
437,195 - GFF2846 0.74 +0.4
437,195 - GFF2846 0.74 -0.4
437,195 - GFF2846 0.74 +0.4
437,195 - GFF2846 0.74 -0.7
437,195 - GFF2846 0.74 -0.5
437,195 - GFF2846 0.74 -1.5
437,195 - GFF2846 0.74 -0.2
437,195 - GFF2846 0.74 -0.0
437,195 - GFF2846 0.74 -1.0
437,195 - GFF2846 0.74 +1.9
437,195 - GFF2846 0.74 +0.4
437,195 - GFF2846 0.74 -1.1
437,197 + GFF2846 0.75 -0.5
437,197 + GFF2846 0.75 -0.5
437,197 + GFF2846 0.75 -0.1
437,197 + GFF2846 0.75 +0.5
437,197 + GFF2846 0.75 -0.1
437,197 + GFF2846 0.75 +0.1
437,197 + GFF2846 0.75 -0.1
437,197 + GFF2846 0.75 +0.1
437,198 - GFF2846 0.75 -0.2
437,198 - GFF2846 0.75 +0.6
437,198 - GFF2846 0.75 +2.0
437,198 - GFF2846 0.75 +0.3
437,198 - GFF2846 0.75 -0.8
437,198 - GFF2846 0.75 -0.0
437,198 - GFF2846 0.75 -0.5
437,198 - GFF2846 0.75 +0.7
437,241 + GFF2846 0.79 -0.3
437,242 - GFF2846 0.79 +0.1
437,242 - GFF2846 0.79 -0.9
437,242 - GFF2846 0.79 +0.5
437,242 - GFF2846 0.79 -0.4
437,242 - GFF2846 0.79 +0.4
437,242 - GFF2846 0.79 +0.3
437,359 + +0.3
437,359 + -0.5
437,359 + +0.3
437,360 - -1.3
437,360 - -1.3
437,360 - -0.4
437,360 - -0.9
437,360 - -0.3
437,360 - -0.0
437,477 - +1.4
437,477 - +0.3
437,515 + +0.9
437,773 + GFF2847 0.77 -0.4
437,773 + GFF2847 0.77 -0.5
437,773 + GFF2847 0.77 +0.5
437,773 + GFF2847 0.77 +1.1
437,811 + +0.0
437,812 - -0.3
437,812 - +1.5
437,830 - GFF2848 0.14 -0.3
437,830 - GFF2848 0.14 -0.7
438,155 + GFF2849 0.17 +0.4
438,155 + GFF2849 0.17 +0.3
438,155 + GFF2849 0.17 -0.5
438,155 + GFF2849 0.17 -0.1
438,155 + GFF2849 0.17 +0.6
438,156 - GFF2849 0.17 +0.7
438,156 - GFF2849 0.17 -0.2
438,156 - GFF2849 0.17 -1.0
438,200 + GFF2849 0.22 +0.0
438,200 + GFF2849 0.22 +0.8
438,201 - GFF2849 0.22 -0.4
438,201 - GFF2849 0.22 -0.3
438,201 - GFF2849 0.22 +0.2
438,299 + GFF2849 0.34 -0.2
438,299 + GFF2849 0.34 -0.2
438,299 + GFF2849 0.34 +0.0
438,299 + GFF2849 0.34 +0.2
438,300 - GFF2849 0.34 +1.3
438,300 - GFF2849 0.34 -0.5
438,300 - GFF2849 0.34 +0.2
438,351 - GFF2849 0.40 +0.7
438,351 - GFF2849 0.40 -0.1
438,359 + GFF2849 0.41 +0.2
438,359 + GFF2849 0.41 -0.3
438,359 + GFF2849 0.41 -0.5
438,360 - GFF2849 0.41 +0.1
438,360 - GFF2849 0.41 +0.7
438,419 + GFF2849 0.48 -0.1
438,419 + GFF2849 0.48 +0.2
438,419 + GFF2849 0.48 +0.3
438,420 - GFF2849 0.48 +0.5
438,420 - GFF2849 0.48 -0.4
438,420 - GFF2849 0.48 +0.1
438,420 - GFF2849 0.48 -0.4
438,533 + GFF2849 0.61 -0.1
438,533 + GFF2849 0.61 +0.4
438,533 + GFF2849 0.61 -0.1
438,533 + GFF2849 0.61 -1.5
438,534 - GFF2849 0.61 +0.3
438,534 - GFF2849 0.61 -0.3
438,534 - GFF2849 0.61 -0.0
438,569 + GFF2849 0.65 +0.3
438,569 + GFF2849 0.65 -0.2
438,569 + GFF2849 0.65 +0.6
438,570 - GFF2849 0.66 -0.1
438,570 - GFF2849 0.66 -0.2
438,570 - GFF2849 0.66 +1.2
438,570 - GFF2849 0.66 +0.2
438,605 + GFF2849 0.70 +0.7
438,605 + GFF2849 0.70 +0.7
438,606 - GFF2849 0.70 +0.0
438,606 - GFF2849 0.70 +0.1
438,668 + GFF2849 0.77 -0.5
438,668 + GFF2849 0.77 +0.8
438,668 + GFF2849 0.77 +0.4
438,713 + GFF2849 0.82 +0.3
438,714 - GFF2849 0.83 -0.0

Or see this region's nucleotide sequence