Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2791 and GFF2792 are separated by 7 nucleotides GFF2792 and GFF2793 are separated by 141 nucleotides
GFF2791 - putative membrane protein, at 387,933 to 389,111
GFF2791
GFF2792 - Predicted transcriptional regulator, at 389,119 to 389,850
GFF2792
GFF2793 - Lysophospholipid transporter LplT / 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) / Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20), at 389,992 to 391,947
GFF2793
Position (kb) 389
390 Strain fitness (log2 ratio) -2
-1
0
1 at 388.435 kb on + strand, within GFF2791 at 388.435 kb on + strand, within GFF2791 at 388.436 kb on - strand, within GFF2791 at 388.436 kb on - strand, within GFF2791 at 388.436 kb on - strand, within GFF2791 at 388.436 kb on - strand, within GFF2791 at 388.436 kb on - strand, within GFF2791 at 388.459 kb on + strand, within GFF2791 at 388.460 kb on - strand, within GFF2791 at 388.763 kb on - strand, within GFF2791 at 388.763 kb on - strand, within GFF2791 at 388.763 kb on - strand, within GFF2791 at 389.375 kb on + strand, within GFF2792 at 389.375 kb on + strand, within GFF2792 at 389.376 kb on - strand, within GFF2792 at 389.486 kb on + strand, within GFF2792 at 389.487 kb on - strand, within GFF2792 at 389.516 kb on + strand, within GFF2792 at 389.718 kb on + strand, within GFF2792 at 389.718 kb on + strand, within GFF2792 at 389.718 kb on + strand, within GFF2792 at 389.719 kb on - strand, within GFF2792 at 389.786 kb on + strand at 390.166 kb on + strand at 390.166 kb on + strand at 390.167 kb on - strand at 390.167 kb on - strand at 390.167 kb on - strand at 390.440 kb on - strand, within GFF2793 at 390.440 kb on - strand, within GFF2793 at 390.628 kb on + strand, within GFF2793 at 390.628 kb on + strand, within GFF2793 at 390.628 kb on + strand, within GFF2793 at 390.628 kb on + strand, within GFF2793 at 390.629 kb on - strand, within GFF2793 at 390.629 kb on - strand, within GFF2793 at 390.629 kb on - strand, within GFF2793 at 390.629 kb on - strand, within GFF2793 at 390.629 kb on - strand, within GFF2793
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 388,435 + GFF2791 0.43 +1.4 388,435 + GFF2791 0.43 +0.4 388,436 - GFF2791 0.43 -0.1 388,436 - GFF2791 0.43 +0.3 388,436 - GFF2791 0.43 -0.2 388,436 - GFF2791 0.43 -1.8 388,436 - GFF2791 0.43 -0.0 388,459 + GFF2791 0.45 -0.0 388,460 - GFF2791 0.45 +1.0 388,763 - GFF2791 0.70 -0.9 388,763 - GFF2791 0.70 -0.4 388,763 - GFF2791 0.70 +0.0 389,375 + GFF2792 0.35 +1.3 389,375 + GFF2792 0.35 -0.1 389,376 - GFF2792 0.35 -0.0 389,486 + GFF2792 0.50 -0.4 389,487 - GFF2792 0.50 +0.5 389,516 + GFF2792 0.54 +0.8 389,718 + GFF2792 0.82 +0.6 389,718 + GFF2792 0.82 +0.5 389,718 + GFF2792 0.82 -0.1 389,719 - GFF2792 0.82 +0.3 389,786 + -1.2 390,166 + +0.5 390,166 + +0.1 390,167 - -1.7 390,167 - +0.5 390,167 - +0.2 390,440 - GFF2793 0.23 +0.1 390,440 - GFF2793 0.23 -0.6 390,628 + GFF2793 0.33 -1.0 390,628 + GFF2793 0.33 +0.4 390,628 + GFF2793 0.33 +0.8 390,628 + GFF2793 0.33 -0.1 390,629 - GFF2793 0.33 +0.2 390,629 - GFF2793 0.33 +0.5 390,629 - GFF2793 0.33 +0.1 390,629 - GFF2793 0.33 -0.2 390,629 - GFF2793 0.33 +0.3
Or see this region's nucleotide sequence