Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2780 and GFF2781 are separated by 226 nucleotides GFF2781 and GFF2782 are separated by 13 nucleotides GFF2782 and GFF2783 are separated by 7 nucleotides
GFF2780 - Pyruvate kinase (EC 2.7.1.40), at 379,829 to 381,262
GFF2780
GFF2781 - hypothetical protein, at 381,489 to 381,653
GFF2781
GFF2782 - Probable transmembrane protein, at 381,667 to 382,344
GFF2782
GFF2783 - Sensor histidine kinase, at 382,352 to 383,704
GFF2783
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1 at 380.697 kb on + strand, within GFF2780 at 380.697 kb on + strand, within GFF2780 at 380.697 kb on + strand, within GFF2780 at 380.697 kb on + strand, within GFF2780 at 380.697 kb on + strand, within GFF2780 at 380.698 kb on - strand, within GFF2780 at 380.931 kb on + strand, within GFF2780 at 380.931 kb on + strand, within GFF2780 at 380.932 kb on - strand, within GFF2780 at 380.932 kb on - strand, within GFF2780 at 380.932 kb on - strand, within GFF2780 at 380.943 kb on - strand, within GFF2780 at 380.943 kb on - strand, within GFF2780 at 380.943 kb on - strand, within GFF2780 at 381.301 kb on - strand at 381.332 kb on - strand at 381.367 kb on + strand at 381.368 kb on - strand at 381.519 kb on + strand, within GFF2781 at 381.520 kb on - strand, within GFF2781 at 381.824 kb on + strand, within GFF2782 at 381.824 kb on + strand, within GFF2782 at 381.824 kb on + strand, within GFF2782 at 381.825 kb on - strand, within GFF2782 at 381.825 kb on - strand, within GFF2782 at 381.825 kb on - strand, within GFF2782 at 381.827 kb on + strand, within GFF2782 at 381.827 kb on + strand, within GFF2782 at 381.843 kb on - strand, within GFF2782 at 381.914 kb on + strand, within GFF2782 at 381.917 kb on + strand, within GFF2782 at 381.917 kb on + strand, within GFF2782 at 381.917 kb on + strand, within GFF2782 at 381.918 kb on - strand, within GFF2782 at 381.930 kb on - strand, within GFF2782 at 381.930 kb on - strand, within GFF2782 at 382.187 kb on + strand, within GFF2782 at 382.187 kb on + strand, within GFF2782 at 382.187 kb on - strand, within GFF2782 at 382.188 kb on - strand, within GFF2782 at 382.188 kb on - strand, within GFF2782 at 382.188 kb on - strand, within GFF2782 at 382.199 kb on + strand, within GFF2782 at 382.199 kb on + strand, within GFF2782 at 382.409 kb on - strand at 382.409 kb on - strand at 382.599 kb on + strand, within GFF2783 at 382.599 kb on + strand, within GFF2783 at 382.599 kb on + strand, within GFF2783 at 382.599 kb on + strand, within GFF2783 at 382.599 kb on + strand, within GFF2783 at 382.599 kb on + strand, within GFF2783 at 382.600 kb on - strand, within GFF2783 at 382.639 kb on - strand, within GFF2783 at 382.639 kb on - strand, within GFF2783
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 380,697 + GFF2780 0.61 -0.3 380,697 + GFF2780 0.61 +0.1 380,697 + GFF2780 0.61 +0.5 380,697 + GFF2780 0.61 -0.0 380,697 + GFF2780 0.61 +0.1 380,698 - GFF2780 0.61 -0.0 380,931 + GFF2780 0.77 -0.5 380,931 + GFF2780 0.77 -0.7 380,932 - GFF2780 0.77 -0.0 380,932 - GFF2780 0.77 +1.0 380,932 - GFF2780 0.77 +0.3 380,943 - GFF2780 0.78 +0.4 380,943 - GFF2780 0.78 +0.7 380,943 - GFF2780 0.78 -0.1 381,301 - -0.0 381,332 - +0.2 381,367 + -0.2 381,368 - +0.3 381,519 + GFF2781 0.18 -0.4 381,520 - GFF2781 0.19 +0.4 381,824 + GFF2782 0.23 -0.9 381,824 + GFF2782 0.23 +1.2 381,824 + GFF2782 0.23 -0.2 381,825 - GFF2782 0.23 +0.5 381,825 - GFF2782 0.23 -0.5 381,825 - GFF2782 0.23 -0.4 381,827 + GFF2782 0.24 +1.2 381,827 + GFF2782 0.24 +0.8 381,843 - GFF2782 0.26 -0.2 381,914 + GFF2782 0.36 +0.1 381,917 + GFF2782 0.37 +1.5 381,917 + GFF2782 0.37 -0.3 381,917 + GFF2782 0.37 -0.0 381,918 - GFF2782 0.37 -0.2 381,930 - GFF2782 0.39 +0.9 381,930 - GFF2782 0.39 +0.7 382,187 + GFF2782 0.77 +0.2 382,187 + GFF2782 0.77 -0.0 382,187 - GFF2782 0.77 +1.0 382,188 - GFF2782 0.77 -0.0 382,188 - GFF2782 0.77 +0.5 382,188 - GFF2782 0.77 -0.0 382,199 + GFF2782 0.78 +0.5 382,199 + GFF2782 0.78 +0.7 382,409 - +1.2 382,409 - +0.2 382,599 + GFF2783 0.18 +0.1 382,599 + GFF2783 0.18 -0.1 382,599 + GFF2783 0.18 -0.9 382,599 + GFF2783 0.18 -0.3 382,599 + GFF2783 0.18 -0.5 382,599 + GFF2783 0.18 +0.5 382,600 - GFF2783 0.18 -0.4 382,639 - GFF2783 0.21 +0.5 382,639 - GFF2783 0.21 -0.8
Or see this region's nucleotide sequence