Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2658

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2656 and GFF2657 are separated by 8 nucleotidesGFF2657 and GFF2658 overlap by 1 nucleotidesGFF2658 and GFF2659 are separated by 279 nucleotidesGFF2659 and GFF2660 are separated by 54 nucleotides GFF2656 - Na(+) H(+) antiporter subunit D, at 248,051 to 249,760 GFF2656 GFF2657 - Na(+) H(+) antiporter subunit C, at 249,769 to 250,113 GFF2657 GFF2658 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 250,113 to 253,061 GFF2658 GFF2659 - hypothetical protein, at 253,341 to 253,547 GFF2659 GFF2660 - Drug resistance transporter, Bcr/CflA family, at 253,602 to 254,771 GFF2660 Position (kb) 250 251 252 253 254Strain fitness (log2 ratio) -1 0 1at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.294 kb on + strand, within GFF2656at 249.543 kb on + strand, within GFF2656at 249.543 kb on + strand, within GFF2656at 249.550 kb on - strand, within GFF2656at 249.911 kb on + strand, within GFF2657at 249.912 kb on - strand, within GFF2657at 250.037 kb on + strand, within GFF2657at 250.037 kb on + strand, within GFF2657at 250.038 kb on - strand, within GFF2657at 250.247 kb on - strandat 250.441 kb on + strand, within GFF2658at 250.441 kb on + strand, within GFF2658at 250.442 kb on - strand, within GFF2658at 250.442 kb on - strand, within GFF2658at 250.522 kb on + strand, within GFF2658at 250.523 kb on - strand, within GFF2658at 250.714 kb on + strand, within GFF2658at 250.714 kb on + strand, within GFF2658at 250.715 kb on - strand, within GFF2658at 250.715 kb on - strand, within GFF2658at 250.883 kb on - strand, within GFF2658at 250.883 kb on - strand, within GFF2658at 251.158 kb on + strand, within GFF2658at 251.158 kb on + strand, within GFF2658at 251.158 kb on + strand, within GFF2658at 251.158 kb on + strand, within GFF2658at 251.158 kb on + strand, within GFF2658at 251.159 kb on - strand, within GFF2658at 251.623 kb on + strand, within GFF2658at 251.623 kb on + strand, within GFF2658at 251.623 kb on + strand, within GFF2658at 251.623 kb on + strand, within GFF2658at 251.624 kb on - strand, within GFF2658at 251.882 kb on - strand, within GFF2658at 251.965 kb on + strand, within GFF2658at 252.155 kb on - strand, within GFF2658at 252.610 kb on + strand, within GFF2658at 252.760 kb on + strand, within GFF2658at 252.760 kb on + strand, within GFF2658at 252.760 kb on + strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.761 kb on - strand, within GFF2658at 252.763 kb on + strand, within GFF2658at 252.773 kb on - strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.919 kb on + strandat 252.920 kb on - strandat 252.920 kb on - strandat 252.920 kb on - strandat 253.255 kb on - strandat 253.320 kb on + strandat 253.321 kb on - strandat 253.732 kb on - strand, within GFF2660at 253.732 kb on - strand, within GFF2660at 253.743 kb on + strand, within GFF2660at 253.743 kb on + strand, within GFF2660at 253.743 kb on + strand, within GFF2660at 253.744 kb on - strand, within GFF2660at 253.744 kb on - strand, within GFF2660at 253.744 kb on - strand, within GFF2660at 253.744 kb on - strand, within GFF2660at 253.744 kb on - strand, within GFF2660at 253.764 kb on + strand, within GFF2660at 253.764 kb on + strand, within GFF2660at 253.764 kb on + strand, within GFF2660at 253.764 kb on + strand, within GFF2660at 253.765 kb on - strand, within GFF2660at 253.983 kb on + strand, within GFF2660at 253.983 kb on + strand, within GFF2660at 253.983 kb on + strand, within GFF2660

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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249,183 + GFF2656 0.66 -0.5
249,183 + GFF2656 0.66 -0.8
249,183 + GFF2656 0.66 -0.2
249,183 + GFF2656 0.66 +0.3
249,183 + GFF2656 0.66 +0.6
249,183 + GFF2656 0.66 +0.2
249,184 - GFF2656 0.66 -0.7
249,184 - GFF2656 0.66 +1.1
249,184 - GFF2656 0.66 +1.3
249,184 - GFF2656 0.66 -0.1
249,184 - GFF2656 0.66 +0.1
249,184 - GFF2656 0.66 -0.2
249,184 - GFF2656 0.66 -0.2
249,240 + GFF2656 0.70 +0.0
249,240 + GFF2656 0.70 -0.3
249,240 + GFF2656 0.70 -0.1
249,240 + GFF2656 0.70 -1.4
249,240 + GFF2656 0.70 +0.1
249,241 - GFF2656 0.70 -0.1
249,241 - GFF2656 0.70 -0.3
249,241 - GFF2656 0.70 -0.2
249,241 - GFF2656 0.70 +0.2
249,241 - GFF2656 0.70 -1.4
249,241 - GFF2656 0.70 +0.1
249,241 - GFF2656 0.70 +0.0
249,294 + GFF2656 0.73 +0.1
249,543 + GFF2656 0.87 -0.3
249,543 + GFF2656 0.87 -0.1
249,550 - GFF2656 0.88 +0.1
249,911 + GFF2657 0.41 +1.5
249,912 - GFF2657 0.41 -0.0
250,037 + GFF2657 0.78 +0.3
250,037 + GFF2657 0.78 -0.2
250,038 - GFF2657 0.78 -0.7
250,247 - -0.1
250,441 + GFF2658 0.11 -0.5
250,441 + GFF2658 0.11 -0.3
250,442 - GFF2658 0.11 -0.6
250,442 - GFF2658 0.11 +0.7
250,522 + GFF2658 0.14 -1.0
250,523 - GFF2658 0.14 -0.6
250,714 + GFF2658 0.20 -0.9
250,714 + GFF2658 0.20 -0.5
250,715 - GFF2658 0.20 -0.6
250,715 - GFF2658 0.20 +0.5
250,883 - GFF2658 0.26 -0.5
250,883 - GFF2658 0.26 -1.3
251,158 + GFF2658 0.35 -0.2
251,158 + GFF2658 0.35 -0.6
251,158 + GFF2658 0.35 -0.9
251,158 + GFF2658 0.35 -0.4
251,158 + GFF2658 0.35 +1.5
251,159 - GFF2658 0.35 +0.5
251,623 + GFF2658 0.51 +0.1
251,623 + GFF2658 0.51 -0.3
251,623 + GFF2658 0.51 -0.1
251,623 + GFF2658 0.51 -0.1
251,624 - GFF2658 0.51 +0.1
251,882 - GFF2658 0.60 -0.6
251,965 + GFF2658 0.63 -0.4
252,155 - GFF2658 0.69 -0.3
252,610 + GFF2658 0.85 -0.3
252,760 + GFF2658 0.90 +0.7
252,760 + GFF2658 0.90 +0.6
252,760 + GFF2658 0.90 -0.7
252,761 - GFF2658 0.90 -0.5
252,761 - GFF2658 0.90 +0.1
252,761 - GFF2658 0.90 -0.1
252,761 - GFF2658 0.90 -0.3
252,761 - GFF2658 0.90 -0.7
252,761 - GFF2658 0.90 -0.3
252,761 - GFF2658 0.90 +0.2
252,761 - GFF2658 0.90 -0.6
252,763 + GFF2658 0.90 +0.7
252,773 - -0.1
252,919 + -0.2
252,919 + +1.1
252,919 + -0.1
252,920 - -0.5
252,920 - +0.1
252,920 - +0.8
253,255 - +0.4
253,320 + -0.1
253,321 - +0.2
253,732 - GFF2660 0.11 -0.7
253,732 - GFF2660 0.11 +0.8
253,743 + GFF2660 0.12 -0.2
253,743 + GFF2660 0.12 -0.1
253,743 + GFF2660 0.12 -0.2
253,744 - GFF2660 0.12 -0.1
253,744 - GFF2660 0.12 +0.4
253,744 - GFF2660 0.12 +0.3
253,744 - GFF2660 0.12 +0.5
253,744 - GFF2660 0.12 +0.9
253,764 + GFF2660 0.14 +0.2
253,764 + GFF2660 0.14 -0.9
253,764 + GFF2660 0.14 +0.0
253,764 + GFF2660 0.14 +0.4
253,765 - GFF2660 0.14 -0.1
253,983 + GFF2660 0.33 -0.6
253,983 + GFF2660 0.33 +0.1
253,983 + GFF2660 0.33 +0.8

Or see this region's nucleotide sequence