Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF227 and GFF228 overlap by 4 nucleotides GFF228 and GFF229 are separated by 57 nucleotides GFF229 and GFF230 overlap by 26 nucleotides GFF230 and GFF231 are separated by 4 nucleotides
GFF227 - FIG028593: membrane protein, at 250,161 to 250,712
GFF227
GFF228 - Acetyltransferase (EC 2.3.1.-), at 250,709 to 251,230
GFF228
GFF229 - Rrf2 family transcriptional regulator, group III, at 251,288 to 251,761
GFF229
GFF230 - Thioredoxin reductase (EC 1.8.1.9), at 251,736 to 252,635
GFF230
GFF231 - probable DNA repair exonuclease, at 252,640 to 253,428
GFF231
Position (kb) 251
252 Strain fitness (log2 ratio) -1
0
1 at 250.380 kb on + strand, within GFF227 at 250.381 kb on - strand, within GFF227 at 250.744 kb on + strand at 250.744 kb on + strand at 251.066 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.126 kb on + strand, within GFF228 at 251.272 kb on + strand at 251.285 kb on + strand at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.522 kb on + strand, within GFF229 at 251.784 kb on + strand at 251.785 kb on - strand at 251.785 kb on - strand at 252.403 kb on + strand, within GFF230
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 250,380 + GFF227 0.40 -0.3 250,381 - GFF227 0.40 -0.6 250,744 + -0.1 250,744 + -0.1 251,066 + GFF228 0.68 -0.3 251,126 + GFF228 0.80 -0.3 251,126 + GFF228 0.80 -0.0 251,272 + +0.3 251,285 + -0.9 251,522 + GFF229 0.49 +0.6 251,522 + GFF229 0.49 +0.4 251,522 + GFF229 0.49 -0.3 251,522 + GFF229 0.49 +0.1 251,784 + +0.1 251,785 - +0.3 251,785 - +0.4 252,403 + GFF230 0.74 +0.1
Or see this region's nucleotide sequence