Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF208

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF207 and GFF208 are separated by 86 nucleotidesGFF208 and GFF209 are separated by 69 nucleotides GFF207 - Nucleoside ABC transporter, permease protein 2, at 224,544 to 225,464 GFF207 GFF208 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 225,551 to 226,669 GFF208 GFF209 - Hypothetical protein with Rieske (2Fe-2S) region, at 226,739 to 227,761 GFF209 Position (kb) 225 226 227Strain fitness (log2 ratio) -1 0 1at 224.808 kb on + strand, within GFF207at 224.871 kb on + strand, within GFF207at 224.872 kb on - strand, within GFF207at 224.872 kb on - strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.973 kb on + strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 224.974 kb on - strand, within GFF207at 225.153 kb on + strand, within GFF207at 225.153 kb on + strand, within GFF207at 225.153 kb on + strand, within GFF207at 225.273 kb on + strand, within GFF207at 225.274 kb on - strand, within GFF207at 225.360 kb on + strand, within GFF207at 225.361 kb on - strand, within GFF207at 225.361 kb on - strand, within GFF207at 225.361 kb on - strand, within GFF207at 225.462 kb on + strandat 225.463 kb on - strandat 225.692 kb on + strand, within GFF208at 225.884 kb on + strand, within GFF208at 225.950 kb on + strand, within GFF208at 225.977 kb on + strand, within GFF208at 225.977 kb on + strand, within GFF208at 225.977 kb on + strand, within GFF208at 225.992 kb on + strand, within GFF208at 225.992 kb on + strand, within GFF208at 226.004 kb on + strand, within GFF208at 226.004 kb on + strand, within GFF208at 226.004 kb on + strand, within GFF208at 226.319 kb on + strand, within GFF208at 226.320 kb on - strand, within GFF208at 226.368 kb on - strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.370 kb on + strand, within GFF208at 226.371 kb on - strand, within GFF208at 226.371 kb on - strand, within GFF208at 226.634 kb on + strandat 226.634 kb on + strandat 226.635 kb on - strandat 226.635 kb on - strandat 226.961 kb on + strand, within GFF209at 226.962 kb on - strand, within GFF209at 227.379 kb on - strand, within GFF209at 227.418 kb on - strand, within GFF209

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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224,808 + GFF207 0.29 -0.7
224,871 + GFF207 0.36 +0.5
224,872 - GFF207 0.36 +0.1
224,872 - GFF207 0.36 +0.2
224,973 + GFF207 0.47 +0.2
224,973 + GFF207 0.47 +0.1
224,973 + GFF207 0.47 +1.5
224,973 + GFF207 0.47 -0.0
224,974 - GFF207 0.47 +0.2
224,974 - GFF207 0.47 +1.0
224,974 - GFF207 0.47 +1.0
224,974 - GFF207 0.47 +0.2
224,974 - GFF207 0.47 -0.2
225,153 + GFF207 0.66 -0.2
225,153 + GFF207 0.66 +0.4
225,153 + GFF207 0.66 +0.0
225,273 + GFF207 0.79 -0.3
225,274 - GFF207 0.79 -0.8
225,360 + GFF207 0.89 +0.2
225,361 - GFF207 0.89 +1.4
225,361 - GFF207 0.89 +0.0
225,361 - GFF207 0.89 -0.1
225,462 + +0.9
225,463 - +0.7
225,692 + GFF208 0.13 +0.7
225,884 + GFF208 0.30 +0.0
225,950 + GFF208 0.36 +0.3
225,977 + GFF208 0.38 +0.3
225,977 + GFF208 0.38 -0.5
225,977 + GFF208 0.38 +0.2
225,992 + GFF208 0.39 -0.0
225,992 + GFF208 0.39 +0.2
226,004 + GFF208 0.40 +0.7
226,004 + GFF208 0.40 +0.9
226,004 + GFF208 0.40 -0.1
226,319 + GFF208 0.69 +0.3
226,320 - GFF208 0.69 +1.7
226,368 - GFF208 0.73 +0.0
226,370 + GFF208 0.73 +0.1
226,370 + GFF208 0.73 +0.5
226,370 + GFF208 0.73 +0.1
226,370 + GFF208 0.73 +0.5
226,370 + GFF208 0.73 +0.3
226,371 - GFF208 0.73 -0.1
226,371 - GFF208 0.73 +0.5
226,634 + +0.6
226,634 + +0.4
226,635 - -0.1
226,635 - -0.4
226,961 + GFF209 0.22 -0.7
226,962 - GFF209 0.22 +0.1
227,379 - GFF209 0.63 +0.2
227,418 - GFF209 0.66 +0.2

Or see this region's nucleotide sequence