Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2050 and GFF2051 are separated by 4 nucleotides GFF2051 and GFF2052 are separated by 68 nucleotides GFF2052 and GFF2053 are separated by 128 nucleotides GFF2053 and GFF2054 are separated by 4 nucleotides GFF2054 and GFF2055 are separated by 64 nucleotides
GFF2050 - Aminotransferase class-III, at 932,382 to 933,737
GFF2050
GFF2051 - Hemerythrin HHE cation binding region, at 933,742 to 934,338
GFF2051
GFF2052 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 934,407 to 936,743
GFF2052
GFF2053 - Copper chaperone, at 936,872 to 937,069
GFF2053
GFF2054 - Cu(I)-responsive transcriptional regulator, at 937,074 to 937,628
GFF2054
GFF2055 - hypothetical protein, at 937,693 to 938,304
GFF2055
Position (kb) 934
935
936
937 Strain fitness (log2 ratio) -1
0
1 at 933.411 kb on + strand, within GFF2050 at 933.412 kb on - strand, within GFF2050 at 933.412 kb on - strand, within GFF2050 at 933.950 kb on + strand, within GFF2051 at 933.950 kb on + strand, within GFF2051 at 933.951 kb on - strand, within GFF2051 at 933.951 kb on - strand, within GFF2051 at 933.951 kb on - strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.185 kb on - strand, within GFF2051 at 934.185 kb on - strand, within GFF2051 at 936.124 kb on + strand, within GFF2052 at 936.124 kb on + strand, within GFF2052 at 936.124 kb on + strand, within GFF2052 at 936.125 kb on - strand, within GFF2052 at 936.125 kb on - strand, within GFF2052 at 936.125 kb on - strand, within GFF2052 at 936.127 kb on + strand, within GFF2052 at 936.127 kb on - strand, within GFF2052 at 936.128 kb on - strand, within GFF2052 at 936.128 kb on - strand, within GFF2052 at 936.262 kb on + strand, within GFF2052 at 936.682 kb on + strand at 936.682 kb on + strand at 936.683 kb on - strand at 936.745 kb on - strand at 936.750 kb on + strand at 936.751 kb on - strand at 936.751 kb on - strand at 936.781 kb on + strand at 936.781 kb on + strand at 936.781 kb on + strand at 937.052 kb on + strand at 937.052 kb on + strand at 937.052 kb on + strand at 937.053 kb on - strand at 937.179 kb on - strand, within GFF2054 at 937.179 kb on - strand, within GFF2054 at 937.209 kb on + strand, within GFF2054 at 937.209 kb on + strand, within GFF2054 at 937.210 kb on - strand, within GFF2054 at 937.257 kb on + strand, within GFF2054 at 937.258 kb on - strand, within GFF2054 at 937.266 kb on + strand, within GFF2054 at 937.266 kb on + strand, within GFF2054
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 933,411 + GFF2050 0.76 -0.6 933,412 - GFF2050 0.76 -0.1 933,412 - GFF2050 0.76 -0.1 933,950 + GFF2051 0.35 -0.1 933,950 + GFF2051 0.35 -0.6 933,951 - GFF2051 0.35 +0.1 933,951 - GFF2051 0.35 -0.3 933,951 - GFF2051 0.35 +0.8 934,184 + GFF2051 0.74 +1.0 934,184 + GFF2051 0.74 +1.6 934,184 + GFF2051 0.74 -0.1 934,184 + GFF2051 0.74 +0.0 934,185 - GFF2051 0.74 -0.1 934,185 - GFF2051 0.74 -1.0 936,124 + GFF2052 0.73 -0.4 936,124 + GFF2052 0.73 -0.6 936,124 + GFF2052 0.73 +0.1 936,125 - GFF2052 0.74 +0.3 936,125 - GFF2052 0.74 -0.7 936,125 - GFF2052 0.74 +0.0 936,127 + GFF2052 0.74 -0.0 936,127 - GFF2052 0.74 +0.2 936,128 - GFF2052 0.74 +0.3 936,128 - GFF2052 0.74 +0.6 936,262 + GFF2052 0.79 +0.0 936,682 + +1.2 936,682 + +0.3 936,683 - +0.1 936,745 - +1.7 936,750 + +0.7 936,751 - -0.3 936,751 - -0.2 936,781 + -0.9 936,781 + -0.4 936,781 + +0.0 937,052 + +0.0 937,052 + -1.0 937,052 + -0.1 937,053 - -0.0 937,179 - GFF2054 0.19 +0.0 937,179 - GFF2054 0.19 -0.7 937,209 + GFF2054 0.24 -0.1 937,209 + GFF2054 0.24 -0.3 937,210 - GFF2054 0.25 -0.6 937,257 + GFF2054 0.33 -0.3 937,258 - GFF2054 0.33 +0.4 937,266 + GFF2054 0.35 +1.4 937,266 + GFF2054 0.35 -0.4
Or see this region's nucleotide sequence