Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2040 and GFF2041 overlap by 4 nucleotides GFF2041 and GFF2042 are separated by 172 nucleotides GFF2042 and GFF2043 overlap by 28 nucleotides GFF2043 and GFF2044 overlap by 1 nucleotides
GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212
GFF2040
GFF2041 - hypothetical protein, at 922,209 to 922,700
GFF2041
GFF2042 - hypothetical protein, at 922,873 to 922,992
GFF2042
GFF2043 - Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster, at 922,965 to 924,266
GFF2043
GFF2044 - Agmatinase (EC 3.5.3.11), at 924,266 to 925,198
GFF2044
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 922.084 kb on + strand at 922.085 kb on - strand at 922.351 kb on - strand, within GFF2041 at 922.537 kb on - strand, within GFF2041 at 922.698 kb on + strand at 922.698 kb on + strand at 922.699 kb on - strand at 922.699 kb on - strand at 922.699 kb on - strand at 922.966 kb on + strand at 922.966 kb on + strand at 922.966 kb on + strand at 922.966 kb on + strand at 923.065 kb on + strand at 923.065 kb on + strand at 923.065 kb on + strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.164 kb on + strand, within GFF2043 at 923.165 kb on - strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.329 kb on + strand, within GFF2043 at 923.329 kb on + strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.380 kb on + strand, within GFF2043 at 923.381 kb on - strand, within GFF2043 at 923.381 kb on - strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.527 kb on + strand, within GFF2043 at 923.693 kb on - strand, within GFF2043 at 923.743 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.870 kb on - strand, within GFF2043 at 923.870 kb on - strand, within GFF2043 at 923.870 kb on - strand, within GFF2043 at 923.875 kb on + strand, within GFF2043 at 923.875 kb on + strand, within GFF2043 at 923.875 kb on + strand, within GFF2043 at 924.220 kb on + strand at 924.220 kb on + strand at 924.220 kb on + strand at 924.220 kb on + strand at 924.221 kb on - strand at 924.306 kb on + strand at 924.307 kb on - strand at 924.357 kb on + strand at 924.357 kb on + strand at 924.358 kb on - strand at 924.517 kb on - strand, within GFF2044 at 924.517 kb on - strand, within GFF2044 at 924.633 kb on + strand, within GFF2044 at 924.634 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.769 kb on + strand, within GFF2044 at 924.770 kb on - strand, within GFF2044 at 925.176 kb on + strand at 925.233 kb on + strand at 925.233 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 922,084 + -0.7 922,085 - -0.6 922,351 - GFF2041 0.29 +0.5 922,537 - GFF2041 0.67 -0.2 922,698 + -0.3 922,698 + -0.2 922,699 - -0.3 922,699 - -0.4 922,699 - +0.5 922,966 + +0.9 922,966 + +0.7 922,966 + -0.7 922,966 + +0.1 923,065 + -1.4 923,065 + -2.6 923,065 + -2.2 923,066 - -0.2 923,066 - -2.1 923,066 - -1.1 923,066 - -1.2 923,066 - -1.5 923,164 + GFF2043 0.15 -2.4 923,165 - GFF2043 0.15 -0.9 923,167 + GFF2043 0.16 -0.6 923,167 + GFF2043 0.16 +0.6 923,167 + GFF2043 0.16 -1.0 923,167 + GFF2043 0.16 -2.0 923,167 + GFF2043 0.16 -2.5 923,167 + GFF2043 0.16 -0.7 923,168 - GFF2043 0.16 -1.2 923,168 - GFF2043 0.16 -0.9 923,168 - GFF2043 0.16 -1.2 923,168 - GFF2043 0.16 -1.9 923,329 + GFF2043 0.28 -1.1 923,329 + GFF2043 0.28 -1.7 923,330 - GFF2043 0.28 -2.0 923,330 - GFF2043 0.28 -2.9 923,330 - GFF2043 0.28 -1.2 923,380 + GFF2043 0.32 -1.8 923,381 - GFF2043 0.32 -1.0 923,381 - GFF2043 0.32 +0.0 923,473 + GFF2043 0.39 -1.9 923,473 + GFF2043 0.39 -0.7 923,473 + GFF2043 0.39 -0.8 923,473 + GFF2043 0.39 -2.3 923,473 + GFF2043 0.39 -0.7 923,473 + GFF2043 0.39 -1.6 923,473 + GFF2043 0.39 -2.3 923,474 - GFF2043 0.39 -1.0 923,474 - GFF2043 0.39 -1.3 923,474 - GFF2043 0.39 +0.6 923,474 - GFF2043 0.39 -3.2 923,474 - GFF2043 0.39 -2.7 923,474 - GFF2043 0.39 -1.8 923,474 - GFF2043 0.39 -0.8 923,474 - GFF2043 0.39 -1.5 923,474 - GFF2043 0.39 -0.3 923,527 + GFF2043 0.43 -1.3 923,693 - GFF2043 0.56 +0.0 923,743 + GFF2043 0.60 -0.9 923,869 + GFF2043 0.69 -2.0 923,869 + GFF2043 0.69 -0.5 923,869 + GFF2043 0.69 -1.6 923,869 + GFF2043 0.69 -2.0 923,869 + GFF2043 0.69 -0.2 923,869 + GFF2043 0.69 -2.2 923,870 - GFF2043 0.70 -1.4 923,870 - GFF2043 0.70 -2.0 923,870 - GFF2043 0.70 -2.0 923,875 + GFF2043 0.70 -0.8 923,875 + GFF2043 0.70 -2.5 923,875 + GFF2043 0.70 -1.8 924,220 + -2.3 924,220 + -1.6 924,220 + -1.7 924,220 + -2.0 924,221 - -2.4 924,306 + -0.3 924,307 - -0.3 924,357 + -0.4 924,357 + +0.4 924,358 - +0.0 924,517 - GFF2044 0.27 -0.9 924,517 - GFF2044 0.27 -1.1 924,633 + GFF2044 0.39 -0.9 924,634 - GFF2044 0.39 -0.4 924,721 - GFF2044 0.49 -0.5 924,721 - GFF2044 0.49 -0.1 924,721 - GFF2044 0.49 +1.6 924,721 - GFF2044 0.49 -1.0 924,769 + GFF2044 0.54 +0.0 924,770 - GFF2044 0.54 -0.6 925,176 + -0.7 925,233 + -0.4 925,233 + +0.6
Or see this region's nucleotide sequence