Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1953 and GFF1954 are separated by 25 nucleotides GFF1954 and GFF1955 are separated by 7 nucleotides GFF1955 and GFF1956 are separated by 28 nucleotides
GFF1953 - hypothetical protein, at 826,401 to 826,904
GFF1953
GFF1954 - hypothetical protein, at 826,930 to 827,565
GFF1954
GFF1955 - hypothetical protein, at 827,573 to 828,181
GFF1955
GFF1956 - Inner membrane protein YqiK, at 828,210 to 829,937
GFF1956
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1 at 826.649 kb on - strand, within GFF1953 at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 827.431 kb on + strand, within GFF1954 at 827.431 kb on + strand, within GFF1954 at 827.431 kb on + strand, within GFF1954 at 827.432 kb on - strand, within GFF1954 at 827.432 kb on - strand, within GFF1954 at 827.432 kb on - strand, within GFF1954 at 827.563 kb on + strand at 827.563 kb on + strand at 827.564 kb on - strand at 827.564 kb on - strand at 827.802 kb on - strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.192 kb on + strand at 828.192 kb on + strand at 828.192 kb on + strand at 828.192 kb on + strand at 828.193 kb on - strand at 828.193 kb on - strand at 828.193 kb on - strand at 828.193 kb on - strand at 828.297 kb on + strand at 828.382 kb on + strand at 828.383 kb on - strand, within GFF1956 at 828.383 kb on - strand, within GFF1956 at 828.803 kb on - strand, within GFF1956 at 829.049 kb on - strand, within GFF1956
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 826,649 - GFF1953 0.49 -1.6 826,967 + -0.1 826,967 + -0.1 826,967 + +0.1 826,967 + -1.2 826,967 + +0.0 826,967 + +1.1 826,967 + +0.3 826,968 - -0.4 826,968 - +0.8 826,968 - -0.6 826,968 - -1.4 826,968 - +0.5 827,431 + GFF1954 0.79 -0.5 827,431 + GFF1954 0.79 +0.3 827,431 + GFF1954 0.79 -0.3 827,432 - GFF1954 0.79 -0.1 827,432 - GFF1954 0.79 +0.2 827,432 - GFF1954 0.79 -0.2 827,563 + -0.8 827,563 + +0.5 827,564 - -0.2 827,564 - +0.7 827,802 - GFF1955 0.38 -1.6 828,059 + GFF1955 0.80 +1.0 828,059 + GFF1955 0.80 -0.1 828,059 + GFF1955 0.80 -0.0 828,059 + GFF1955 0.80 -0.1 828,059 + GFF1955 0.80 +0.6 828,060 - GFF1955 0.80 -1.7 828,060 - GFF1955 0.80 +0.1 828,060 - GFF1955 0.80 -0.1 828,060 - GFF1955 0.80 +0.3 828,060 - GFF1955 0.80 -0.8 828,060 - GFF1955 0.80 +0.6 828,192 + -0.3 828,192 + -0.1 828,192 + -0.1 828,192 + -0.0 828,193 - -0.1 828,193 - +0.2 828,193 - +1.6 828,193 - +0.5 828,297 + -0.7 828,382 + -0.1 828,383 - GFF1956 0.10 -1.1 828,383 - GFF1956 0.10 -2.0 828,803 - GFF1956 0.34 +0.4 829,049 - GFF1956 0.49 +0.5
Or see this region's nucleotide sequence