Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1863

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1861 and GFF1862 are separated by 14 nucleotidesGFF1862 and GFF1863 overlap by 4 nucleotidesGFF1863 and GFF1864 overlap by 4 nucleotidesGFF1864 and GFF1865 are separated by 5 nucleotides GFF1861 - identified by sequence similarity; putative; ORF located using Blastx/Glimmer, at 724,738 to 725,712 GFF1861 GFF1862 - Probable glycosyltransferase, at 725,727 to 726,494 GFF1862 GFF1863 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 726,491 to 727,435 GFF1863 GFF1864 - Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-), at 727,432 to 727,992 GFF1864 GFF1865 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 727,998 to 729,953 GFF1865 Position (kb) 726 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.509 kb on + strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.510 kb on - strand, within GFF1861at 725.542 kb on + strand, within GFF1861at 725.543 kb on - strand, within GFF1861at 725.551 kb on + strand, within GFF1861at 725.551 kb on + strand, within GFF1861at 725.552 kb on - strand, within GFF1861at 725.552 kb on - strand, within GFF1861at 725.552 kb on - strand, within GFF1861at 725.552 kb on - strand, within GFF1861at 725.552 kb on - strand, within GFF1861at 725.552 kb on - strand, within GFF1861at 725.552 kb on - strand, within GFF1861at 725.707 kb on + strandat 725.708 kb on - strandat 725.943 kb on + strand, within GFF1862at 725.943 kb on + strand, within GFF1862at 725.943 kb on + strand, within GFF1862at 725.943 kb on + strand, within GFF1862at 725.943 kb on + strand, within GFF1862at 725.943 kb on + strand, within GFF1862at 725.943 kb on - strand, within GFF1862at 725.944 kb on - strand, within GFF1862at 725.944 kb on - strand, within GFF1862at 725.944 kb on - strand, within GFF1862at 725.944 kb on - strand, within GFF1862at 725.944 kb on - strand, within GFF1862at 725.944 kb on - strand, within GFF1862at 725.944 kb on - strand, within GFF1862at 726.015 kb on + strand, within GFF1862at 726.016 kb on - strand, within GFF1862at 726.016 kb on - strand, within GFF1862at 726.016 kb on - strand, within GFF1862at 726.016 kb on - strand, within GFF1862at 726.171 kb on + strand, within GFF1862at 726.171 kb on + strand, within GFF1862at 726.171 kb on + strand, within GFF1862at 726.171 kb on + strand, within GFF1862at 726.172 kb on - strand, within GFF1862at 726.172 kb on - strand, within GFF1862at 726.249 kb on + strand, within GFF1862at 726.250 kb on - strand, within GFF1862at 726.250 kb on - strand, within GFF1862at 726.459 kb on + strandat 726.740 kb on + strand, within GFF1863at 726.740 kb on + strand, within GFF1863at 726.740 kb on + strand, within GFF1863at 726.741 kb on - strand, within GFF1863at 726.741 kb on - strand, within GFF1863at 726.995 kb on + strand, within GFF1863at 726.995 kb on + strand, within GFF1863at 726.995 kb on + strand, within GFF1863at 726.995 kb on + strand, within GFF1863at 726.995 kb on + strand, within GFF1863at 726.995 kb on + strand, within GFF1863at 726.995 kb on + strand, within GFF1863at 726.996 kb on - strand, within GFF1863at 726.996 kb on - strand, within GFF1863at 726.996 kb on - strand, within GFF1863at 726.996 kb on - strand, within GFF1863at 726.996 kb on - strand, within GFF1863at 726.997 kb on - strand, within GFF1863at 727.543 kb on + strand, within GFF1864at 727.543 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.904 kb on - strand, within GFF1864at 727.904 kb on - strand, within GFF1864at 727.941 kb on - strandat 727.941 kb on - strandat 727.990 kb on + strandat 728.244 kb on + strand, within GFF1865at 728.244 kb on + strand, within GFF1865at 728.245 kb on - strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.293 kb on - strand, within GFF1865at 728.293 kb on - strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.415 kb on + strand, within GFF1865at 728.416 kb on - strand, within GFF1865at 728.416 kb on - strand, within GFF1865at 728.433 kb on + strand, within GFF1865at 728.433 kb on + strand, within GFF1865at 728.434 kb on - strand, within GFF1865

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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725,509 + GFF1861 0.79 -2.4
725,509 + GFF1861 0.79 -1.4
725,509 + GFF1861 0.79 -2.7
725,509 + GFF1861 0.79 -2.8
725,509 + GFF1861 0.79 -1.7
725,509 + GFF1861 0.79 -3.3
725,509 + GFF1861 0.79 -1.4
725,509 + GFF1861 0.79 -2.2
725,509 + GFF1861 0.79 -2.5
725,509 + GFF1861 0.79 -1.3
725,510 - GFF1861 0.79 -2.5
725,510 - GFF1861 0.79 -2.6
725,510 - GFF1861 0.79 -0.2
725,510 - GFF1861 0.79 -1.5
725,510 - GFF1861 0.79 -1.8
725,510 - GFF1861 0.79 -0.6
725,510 - GFF1861 0.79 -1.3
725,510 - GFF1861 0.79 -0.8
725,510 - GFF1861 0.79 -2.2
725,542 + GFF1861 0.82 -0.7
725,543 - GFF1861 0.83 -3.3
725,551 + GFF1861 0.83 -1.0
725,551 + GFF1861 0.83 -2.4
725,552 - GFF1861 0.83 -1.4
725,552 - GFF1861 0.83 -3.0
725,552 - GFF1861 0.83 -2.5
725,552 - GFF1861 0.83 -0.6
725,552 - GFF1861 0.83 -2.1
725,552 - GFF1861 0.83 -1.7
725,552 - GFF1861 0.83 -1.2
725,707 + -0.4
725,708 - -0.1
725,943 + GFF1862 0.28 -1.8
725,943 + GFF1862 0.28 -2.3
725,943 + GFF1862 0.28 -1.1
725,943 + GFF1862 0.28 -2.1
725,943 + GFF1862 0.28 -1.5
725,943 + GFF1862 0.28 -1.0
725,943 - GFF1862 0.28 -1.7
725,944 - GFF1862 0.28 -2.3
725,944 - GFF1862 0.28 -1.1
725,944 - GFF1862 0.28 -2.5
725,944 - GFF1862 0.28 -1.2
725,944 - GFF1862 0.28 -2.0
725,944 - GFF1862 0.28 -3.1
725,944 - GFF1862 0.28 -2.5
726,015 + GFF1862 0.38 -2.3
726,016 - GFF1862 0.38 -1.7
726,016 - GFF1862 0.38 -2.5
726,016 - GFF1862 0.38 -1.3
726,016 - GFF1862 0.38 -3.0
726,171 + GFF1862 0.58 -2.7
726,171 + GFF1862 0.58 -0.8
726,171 + GFF1862 0.58 -1.8
726,171 + GFF1862 0.58 -1.7
726,172 - GFF1862 0.58 -1.8
726,172 - GFF1862 0.58 -1.5
726,249 + GFF1862 0.68 -1.9
726,250 - GFF1862 0.68 -1.6
726,250 - GFF1862 0.68 +0.6
726,459 + +0.0
726,740 + GFF1863 0.26 -1.6
726,740 + GFF1863 0.26 -0.9
726,740 + GFF1863 0.26 -0.5
726,741 - GFF1863 0.26 -0.3
726,741 - GFF1863 0.26 -0.8
726,995 + GFF1863 0.53 -2.0
726,995 + GFF1863 0.53 +0.1
726,995 + GFF1863 0.53 +0.6
726,995 + GFF1863 0.53 -0.8
726,995 + GFF1863 0.53 +0.7
726,995 + GFF1863 0.53 -0.2
726,995 + GFF1863 0.53 -0.6
726,996 - GFF1863 0.53 -0.9
726,996 - GFF1863 0.53 -1.0
726,996 - GFF1863 0.53 -1.3
726,996 - GFF1863 0.53 -0.4
726,996 - GFF1863 0.53 -0.7
726,997 - GFF1863 0.54 -1.1
727,543 + GFF1864 0.20 -2.3
727,543 + GFF1864 0.20 -3.5
727,657 + GFF1864 0.40 -0.4
727,657 + GFF1864 0.40 -1.2
727,657 + GFF1864 0.40 -2.5
727,657 + GFF1864 0.40 -2.9
727,657 + GFF1864 0.40 -2.2
727,657 + GFF1864 0.40 -2.2
727,657 + GFF1864 0.40 -1.8
727,658 - GFF1864 0.40 -2.5
727,658 - GFF1864 0.40 -2.5
727,658 - GFF1864 0.40 -1.6
727,658 - GFF1864 0.40 -1.0
727,658 - GFF1864 0.40 -1.5
727,658 - GFF1864 0.40 -3.6
727,658 - GFF1864 0.40 -2.9
727,658 - GFF1864 0.40 -1.3
727,658 - GFF1864 0.40 -2.5
727,658 - GFF1864 0.40 -1.1
727,903 + GFF1864 0.84 -1.5
727,903 + GFF1864 0.84 -1.6
727,903 + GFF1864 0.84 -0.4
727,903 + GFF1864 0.84 -1.8
727,904 - GFF1864 0.84 -2.5
727,904 - GFF1864 0.84 -1.7
727,941 - -1.9
727,941 - -0.5
727,990 + +0.2
728,244 + GFF1865 0.13 -2.2
728,244 + GFF1865 0.13 -1.1
728,245 - GFF1865 0.13 -2.1
728,292 + GFF1865 0.15 -1.7
728,292 + GFF1865 0.15 -2.1
728,292 + GFF1865 0.15 -1.1
728,292 + GFF1865 0.15 -1.4
728,292 + GFF1865 0.15 -2.1
728,293 - GFF1865 0.15 -1.5
728,293 - GFF1865 0.15 +0.0
728,304 + GFF1865 0.16 -2.5
728,304 + GFF1865 0.16 -1.4
728,304 + GFF1865 0.16 -1.1
728,304 + GFF1865 0.16 -1.2
728,304 + GFF1865 0.16 -2.0
728,304 + GFF1865 0.16 -0.3
728,304 + GFF1865 0.16 -1.0
728,304 + GFF1865 0.16 -1.9
728,304 + GFF1865 0.16 -1.8
728,304 + GFF1865 0.16 -1.3
728,304 + GFF1865 0.16 -3.3
728,304 + GFF1865 0.16 -1.9
728,304 + GFF1865 0.16 -2.0
728,304 + GFF1865 0.16 -2.5
728,305 - GFF1865 0.16 -2.8
728,305 - GFF1865 0.16 -3.5
728,305 - GFF1865 0.16 -1.0
728,305 - GFF1865 0.16 -1.5
728,305 - GFF1865 0.16 -0.5
728,305 - GFF1865 0.16 -1.9
728,305 - GFF1865 0.16 -1.0
728,305 - GFF1865 0.16 -3.6
728,305 - GFF1865 0.16 -1.0
728,305 - GFF1865 0.16 -2.0
728,305 - GFF1865 0.16 +0.0
728,305 - GFF1865 0.16 -0.4
728,305 - GFF1865 0.16 -2.7
728,305 - GFF1865 0.16 -1.8
728,305 - GFF1865 0.16 -2.8
728,362 + GFF1865 0.19 -2.1
728,362 + GFF1865 0.19 -2.3
728,362 + GFF1865 0.19 -1.6
728,362 + GFF1865 0.19 -1.6
728,362 + GFF1865 0.19 -1.7
728,362 + GFF1865 0.19 -1.9
728,362 + GFF1865 0.19 -2.3
728,362 + GFF1865 0.19 -1.2
728,362 + GFF1865 0.19 -1.6
728,362 + GFF1865 0.19 -2.0
728,362 + GFF1865 0.19 -2.6
728,363 - GFF1865 0.19 -2.4
728,363 - GFF1865 0.19 +1.0
728,363 - GFF1865 0.19 -1.2
728,363 - GFF1865 0.19 +1.4
728,363 - GFF1865 0.19 -0.6
728,363 - GFF1865 0.19 -1.5
728,363 - GFF1865 0.19 +1.3
728,363 - GFF1865 0.19 -0.8
728,363 - GFF1865 0.19 -0.5
728,363 - GFF1865 0.19 -2.5
728,363 - GFF1865 0.19 -1.7
728,415 + GFF1865 0.21 -3.6
728,416 - GFF1865 0.21 -2.4
728,416 - GFF1865 0.21 -0.4
728,433 + GFF1865 0.22 -1.8
728,433 + GFF1865 0.22 -1.7
728,434 - GFF1865 0.22 -2.4

Or see this region's nucleotide sequence