Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1803 and GFF1804 are separated by 91 nucleotides GFF1804 and GFF1805 are separated by 158 nucleotides GFF1805 and GFF1806 are separated by 134 nucleotides
GFF1803 - Translation elongation factor G, at 671,093 to 673,195
GFF1803
GFF1804 - SSU ribosomal protein S7p (S5e), at 673,287 to 673,757
GFF1804
GFF1805 - SSU ribosomal protein S12p (S23e), at 673,916 to 674,293
GFF1805
GFF1806 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 674,428 to 675,606
GFF1806
Position (kb) 673
674
675 Strain fitness (log2 ratio) -2
-1
0
1 at 673.269 kb on - strand at 673.269 kb on - strand at 673.269 kb on - strand at 673.864 kb on - strand at 673.864 kb on - strand at 673.864 kb on - strand at 673.918 kb on - strand at 673.918 kb on - strand at 673.918 kb on - strand at 673.918 kb on - strand at 674.361 kb on - strand at 674.362 kb on - strand at 674.362 kb on - strand at 674.362 kb on - strand at 674.362 kb on - strand at 674.362 kb on - strand at 674.362 kb on - strand at 674.362 kb on - strand at 674.362 kb on - strand at 674.367 kb on - strand at 674.367 kb on - strand at 674.367 kb on - strand at 674.367 kb on - strand at 674.367 kb on - strand at 674.429 kb on + strand at 674.430 kb on - strand at 674.430 kb on - strand at 674.762 kb on + strand, within GFF1806 at 674.762 kb on + strand, within GFF1806 at 674.762 kb on + strand, within GFF1806 at 674.762 kb on + strand, within GFF1806 at 674.762 kb on + strand, within GFF1806 at 674.763 kb on - strand, within GFF1806 at 674.763 kb on - strand, within GFF1806 at 674.763 kb on - strand, within GFF1806 at 674.906 kb on + strand, within GFF1806 at 674.906 kb on + strand, within GFF1806 at 674.906 kb on + strand, within GFF1806 at 674.906 kb on + strand, within GFF1806 at 674.907 kb on - strand, within GFF1806 at 674.907 kb on - strand, within GFF1806 at 674.944 kb on + strand, within GFF1806 at 674.944 kb on + strand, within GFF1806 at 674.945 kb on - strand, within GFF1806 at 674.945 kb on - strand, within GFF1806 at 674.945 kb on - strand, within GFF1806 at 674.945 kb on - strand, within GFF1806 at 674.945 kb on - strand, within GFF1806 at 675.015 kb on - strand, within GFF1806 at 675.029 kb on + strand, within GFF1806 at 675.029 kb on + strand, within GFF1806 at 675.029 kb on + strand, within GFF1806 at 675.029 kb on + strand, within GFF1806 at 675.029 kb on + strand, within GFF1806 at 675.030 kb on - strand, within GFF1806 at 675.030 kb on - strand, within GFF1806 at 675.030 kb on - strand, within GFF1806 at 675.030 kb on - strand, within GFF1806 at 675.030 kb on - strand, within GFF1806 at 675.030 kb on - strand, within GFF1806 at 675.032 kb on + strand, within GFF1806 at 675.032 kb on + strand, within GFF1806 at 675.032 kb on + strand, within GFF1806 at 675.033 kb on - strand, within GFF1806 at 675.033 kb on - strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.041 kb on + strand, within GFF1806 at 675.042 kb on - strand, within GFF1806 at 675.042 kb on - strand, within GFF1806 at 675.042 kb on - strand, within GFF1806 at 675.042 kb on - strand, within GFF1806 at 675.042 kb on - strand, within GFF1806 at 675.137 kb on + strand, within GFF1806 at 675.138 kb on - strand, within GFF1806 at 675.138 kb on - strand, within GFF1806
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 673,269 - -0.6 673,269 - -1.0 673,269 - -0.4 673,864 - -1.1 673,864 - -0.4 673,864 - -0.7 673,918 - -0.5 673,918 - -0.7 673,918 - -0.9 673,918 - -1.6 674,361 - +1.1 674,362 - -0.9 674,362 - +0.6 674,362 - -1.9 674,362 - -0.8 674,362 - -1.1 674,362 - -1.4 674,362 - +0.7 674,362 - -0.6 674,367 - +0.0 674,367 - +0.4 674,367 - +0.1 674,367 - +0.6 674,367 - -0.7 674,429 + -0.2 674,430 - +0.7 674,430 - +0.2 674,762 + GFF1806 0.28 -0.2 674,762 + GFF1806 0.28 +0.2 674,762 + GFF1806 0.28 +0.1 674,762 + GFF1806 0.28 -0.6 674,762 + GFF1806 0.28 -0.7 674,763 - GFF1806 0.28 +0.0 674,763 - GFF1806 0.28 +0.3 674,763 - GFF1806 0.28 +0.1 674,906 + GFF1806 0.41 -1.3 674,906 + GFF1806 0.41 -0.2 674,906 + GFF1806 0.41 +0.3 674,906 + GFF1806 0.41 -0.6 674,907 - GFF1806 0.41 +0.1 674,907 - GFF1806 0.41 -0.0 674,944 + GFF1806 0.44 -1.0 674,944 + GFF1806 0.44 -0.3 674,945 - GFF1806 0.44 +0.4 674,945 - GFF1806 0.44 -0.2 674,945 - GFF1806 0.44 -0.7 674,945 - GFF1806 0.44 -0.1 674,945 - GFF1806 0.44 +0.0 675,015 - GFF1806 0.50 +0.2 675,029 + GFF1806 0.51 -0.5 675,029 + GFF1806 0.51 -0.4 675,029 + GFF1806 0.51 +0.2 675,029 + GFF1806 0.51 -0.1 675,029 + GFF1806 0.51 +0.8 675,030 - GFF1806 0.51 -0.4 675,030 - GFF1806 0.51 +0.5 675,030 - GFF1806 0.51 -0.0 675,030 - GFF1806 0.51 +0.3 675,030 - GFF1806 0.51 +0.1 675,030 - GFF1806 0.51 -0.3 675,032 + GFF1806 0.51 -0.0 675,032 + GFF1806 0.51 -0.1 675,032 + GFF1806 0.51 +0.3 675,033 - GFF1806 0.51 -1.6 675,033 - GFF1806 0.51 +0.1 675,041 + GFF1806 0.52 +0.3 675,041 + GFF1806 0.52 -0.8 675,041 + GFF1806 0.52 -0.5 675,041 + GFF1806 0.52 +1.2 675,041 + GFF1806 0.52 +1.6 675,041 + GFF1806 0.52 +0.5 675,041 + GFF1806 0.52 -0.2 675,041 + GFF1806 0.52 +0.2 675,041 + GFF1806 0.52 -0.7 675,041 + GFF1806 0.52 -1.1 675,041 + GFF1806 0.52 +0.2 675,041 + GFF1806 0.52 +0.2 675,041 + GFF1806 0.52 -0.1 675,041 + GFF1806 0.52 +1.3 675,042 - GFF1806 0.52 +0.0 675,042 - GFF1806 0.52 +1.1 675,042 - GFF1806 0.52 -0.5 675,042 - GFF1806 0.52 +0.5 675,042 - GFF1806 0.52 -0.7 675,137 + GFF1806 0.60 -1.0 675,138 - GFF1806 0.60 -0.7 675,138 - GFF1806 0.60 +0.3
Or see this region's nucleotide sequence