Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1802

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1801 and GFF1802 overlap by 4 nucleotidesGFF1802 and GFF1803 are separated by 152 nucleotides GFF1801 - Translation elongation factor Tu, at 669,601 to 670,755 GFF1801 GFF1802 - Translation elongation factor Tu, at 670,752 to 670,940 GFF1802 GFF1803 - Translation elongation factor G, at 671,093 to 673,195 GFF1803 Position (kb) 670 671Strain fitness (log2 ratio) -2 -1 0 1at 669.858 kb on - strand, within GFF1801at 670.953 kb on - strandat 671.149 kb on - strandat 671.149 kb on - strandat 671.170 kb on - strandat 671.170 kb on - strandat 671.170 kb on - strandat 671.170 kb on - strandat 671.170 kb on - strandat 671.332 kb on - strand, within GFF1803at 671.464 kb on - strand, within GFF1803at 671.464 kb on - strand, within GFF1803at 671.566 kb on - strand, within GFF1803

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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669,858 - GFF1801 0.22 -1.9
670,953 - -1.0
671,149 - -1.2
671,149 - -0.2
671,170 - -2.3
671,170 - -1.0
671,170 - -0.9
671,170 - -0.4
671,170 - -1.1
671,332 - GFF1803 0.11 -1.2
671,464 - GFF1803 0.18 +0.1
671,464 - GFF1803 0.18 -0.5
671,566 - GFF1803 0.22 -1.3

Or see this region's nucleotide sequence