Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF153 and GFF154 overlap by 31 nucleotides GFF154 and GFF155 are separated by 14 nucleotides GFF155 and GFF156 are separated by 2 nucleotides GFF156 and GFF157 are separated by 55 nucleotides
GFF153 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,390 to 168,701
GFF153
GFF154 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,671 to 168,826
GFF154
GFF155 - ABC-type multidrug transport system, permease component, at 168,841 to 169,608
GFF155
GFF156 - ABC-type multidrug transport system, ATPase component, at 169,611 to 170,573
GFF156
GFF157 - Radical SAM domain protein, at 170,629 to 171,723
GFF157
Position (kb) 169
170
171 Strain fitness (log2 ratio) -1
0
1 at 168.762 kb on + strand, within GFF154 at 168.857 kb on + strand at 168.857 kb on + strand at 168.858 kb on - strand at 168.956 kb on + strand, within GFF155 at 168.957 kb on - strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.986 kb on + strand, within GFF155 at 168.987 kb on - strand, within GFF155 at 169.046 kb on + strand, within GFF155 at 169.286 kb on + strand, within GFF155 at 169.286 kb on + strand, within GFF155 at 169.286 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.361 kb on + strand, within GFF155 at 169.362 kb on - strand, within GFF155 at 169.362 kb on - strand, within GFF155 at 169.762 kb on + strand, within GFF156 at 169.762 kb on + strand, within GFF156 at 169.762 kb on + strand, within GFF156 at 169.762 kb on + strand, within GFF156 at 169.763 kb on - strand, within GFF156 at 169.763 kb on - strand, within GFF156 at 169.763 kb on - strand, within GFF156 at 169.966 kb on + strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 169.967 kb on - strand, within GFF156 at 170.204 kb on - strand, within GFF156 at 170.326 kb on + strand, within GFF156 at 170.503 kb on + strand at 170.503 kb on + strand at 170.504 kb on - strand at 170.900 kb on - strand, within GFF157 at 170.900 kb on - strand, within GFF157 at 170.900 kb on - strand, within GFF157 at 170.905 kb on + strand, within GFF157 at 170.927 kb on - strand, within GFF157 at 170.927 kb on - strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.064 kb on + strand, within GFF157 at 171.065 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.221 kb on - strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.430 kb on + strand, within GFF157 at 171.431 kb on - strand, within GFF157 at 171.431 kb on - strand, within GFF157 at 171.553 kb on + strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.554 kb on - strand, within GFF157 at 171.554 kb on - strand, within GFF157
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 168,762 + GFF154 0.58 -1.0 168,857 + +0.6 168,857 + -0.1 168,858 - +0.2 168,956 + GFF155 0.15 +0.1 168,957 - GFF155 0.15 +0.8 168,986 + GFF155 0.19 -0.2 168,986 + GFF155 0.19 -0.2 168,986 + GFF155 0.19 -0.3 168,986 + GFF155 0.19 +0.7 168,987 - GFF155 0.19 -0.0 169,046 + GFF155 0.27 +0.2 169,286 + GFF155 0.58 -1.3 169,286 + GFF155 0.58 +1.1 169,286 + GFF155 0.58 +0.9 169,361 + GFF155 0.68 -0.4 169,361 + GFF155 0.68 -0.1 169,361 + GFF155 0.68 +0.2 169,361 + GFF155 0.68 +0.1 169,361 + GFF155 0.68 +0.3 169,362 - GFF155 0.68 +0.8 169,362 - GFF155 0.68 +0.1 169,762 + GFF156 0.16 -0.4 169,762 + GFF156 0.16 +0.2 169,762 + GFF156 0.16 -0.6 169,762 + GFF156 0.16 -0.6 169,763 - GFF156 0.16 +0.4 169,763 - GFF156 0.16 +0.2 169,763 - GFF156 0.16 +1.2 169,966 + GFF156 0.37 +0.4 169,967 - GFF156 0.37 +0.1 169,967 - GFF156 0.37 -0.2 169,967 - GFF156 0.37 -1.2 169,967 - GFF156 0.37 +0.3 170,204 - GFF156 0.62 -0.5 170,326 + GFF156 0.74 -0.7 170,503 + +0.3 170,503 + +0.2 170,504 - -0.8 170,900 - GFF157 0.25 -0.4 170,900 - GFF157 0.25 +0.5 170,900 - GFF157 0.25 +0.0 170,905 + GFF157 0.25 +1.0 170,927 - GFF157 0.27 -0.1 170,927 - GFF157 0.27 -0.5 171,064 + GFF157 0.40 -0.0 171,064 + GFF157 0.40 +1.3 171,064 + GFF157 0.40 -0.1 171,065 - GFF157 0.40 -0.0 171,221 - GFF157 0.54 +0.1 171,221 - GFF157 0.54 -0.5 171,221 - GFF157 0.54 -0.4 171,430 + GFF157 0.73 +0.7 171,430 + GFF157 0.73 -1.0 171,430 + GFF157 0.73 -0.1 171,431 - GFF157 0.73 -0.3 171,431 - GFF157 0.73 +1.3 171,553 + GFF157 0.84 -0.0 171,554 - GFF157 0.84 +0.4 171,554 - GFF157 0.84 -0.0 171,554 - GFF157 0.84 -0.7
Or see this region's nucleotide sequence